Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 9.2e-75 283.5 145 100.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 5.6e-64 247.7 139 91.4
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.2e-63 246.5 139 91.4
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.8e-45 184.5 138 68.1
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.8e-45 184.5 138 68.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.2e-44 182.6 138 67.4
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.2e-44 182.6 138 65.9
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 6.4e-44 181.0 138 64.5
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-43 180.3 138 65.2
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.1e-43 180.3 138 65.2
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-43 179.5 136 66.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-43 179.5 136 66.9
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.9e-43 179.5 136 65.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.4e-43 179.1 138 63.8
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 3.2e-43 178.7 138 64.5
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.2e-43 178.7 138 65.9
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.2e-43 178.7 138 64.5
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.2e-43 178.3 138 64.5
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 4.2e-43 178.3 136 65.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 4.2e-43 178.3 138 63.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.4e-43 177.9 138 63.8
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 5.4e-43 177.9 136 64.7
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 5.4e-43 177.9 138 64.5
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 5.4e-43 177.9 138 64.5
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 5.4e-43 177.9 138 64.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 5.4e-43 177.9 136 64.0
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 7.1e-43 177.6 138 63.0
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 7.1e-43 177.6 136 66.2
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 7.1e-43 177.6 138 65.9
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 9.3e-43 177.2 138 62.3
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 9.3e-43 177.2 138 64.5
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 9.3e-43 177.2 138 63.8
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.3e-43 177.2 138 63.8
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.3e-43 177.2 138 63.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 9.3e-43 177.2 136 66.2
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-42 176.8 138 65.2
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.2e-42 176.8 136 64.0
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.2e-42 176.8 136 65.4
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.6e-42 176.4 136 64.7
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.6e-42 176.4 136 65.4
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 2.1e-42 176.0 138 63.8
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.1e-42 176.0 136 64.0
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.1e-42 176.0 138 63.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 2.7e-42 175.6 136 64.7
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.7e-42 175.6 137 65.0
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.7e-42 175.6 138 63.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.7e-42 175.6 138 63.8
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.5e-42 175.3 138 63.0
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 3.5e-42 175.3 138 64.5
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.5e-42 175.3 136 64.7
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 4.6e-42 174.9 138 63.8
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 4.6e-42 174.9 138 63.0
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 6.0e-42 174.5 138 63.8
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 6.0e-42 174.5 138 64.5
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 6.0e-42 174.5 138 64.5
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 7.8e-42 174.1 138 63.0
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 7.8e-42 174.1 138 61.6
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.0e-41 173.7 136 62.5
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.3e-41 173.3 138 63.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-41 173.3 138 63.0
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.3e-41 173.3 138 63.0
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.7e-41 172.9 138 62.3
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.7e-41 172.9 136 62.5
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.7e-41 172.9 137 61.3
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.7e-41 172.9 136 61.0
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-41 172.6 138 62.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 2.3e-41 172.6 136 62.5
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.3e-41 172.6 136 61.8
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 62.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 3.0e-41 172.2 136 61.8
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 3.0e-41 172.2 136 61.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.0e-41 172.2 138 61.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.0e-41 172.2 136 63.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 3.9e-41 171.8 138 62.3
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 3.9e-41 171.8 138 62.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 5.1e-41 171.4 138 62.3
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 6.6e-41 171.0 136 63.2
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.6e-41 171.0 138 62.3
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 8.7e-41 170.6 138 62.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 8.7e-41 170.6 136 64.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.1e-40 170.2 136 61.8
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.1e-40 170.2 138 60.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.1e-40 170.2 136 61.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.1e-40 170.2 136 63.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.1e-40 170.2 136 61.0
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-40 169.5 138 60.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.9e-40 169.5 138 63.0
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 2.5e-40 169.1 136 61.0
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.3e-40 168.7 138 60.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 3.3e-40 168.7 136 60.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.3e-40 168.3 142 61.3
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.3e-40 168.3 149 59.1
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.3e-40 167.5 138 59.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.3e-40 167.5 138 60.1
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 7.3e-40 167.5 136 60.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.6e-39 166.4 138 59.4
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.6e-39 166.4 138 59.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 3.6e-39 165.2 140 59.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-38 163.7 133 60.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.1e-38 163.7 143 60.1
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.4e-38 163.3 138 60.1
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.4e-38 162.5 138 58.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.4e-38 162.5 138 58.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 3.1e-38 162.2 137 61.3
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.3e-38 161.4 138 57.2
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.3e-38 161.4 136 58.8
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 6.9e-38 161.0 138 58.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.5e-37 159.8 166 53.6
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 2.6e-37 159.1 136 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.8e-37 157.9 136 56.6
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 7.6e-37 157.5 133 59.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.6e-37 157.5 136 58.8
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 9.9e-37 157.1 136 58.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.7e-36 156.4 136 55.9
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.7e-36 156.4 136 58.8
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.2e-36 156.0 131 61.8
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.1e-35 153.7 122 63.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-35 152.5 117 64.1
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.4e-35 152.5 138 55.8
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-35 152.1 116 64.7
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 9.3e-35 150.6 136 52.9
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 9.3e-35 150.6 131 58.0
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.2e-34 150.2 136 55.9
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-34 150.2 116 63.8
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-34 149.8 116 63.8
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-34 149.1 117 63.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.5e-34 148.7 116 63.8
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.6e-34 148.3 119 63.9
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-33 147.1 116 62.9
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-33 146.7 116 62.1
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 4.3e-32 141.7 116 62.1
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 9.6e-32 140.6 136 51.5
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.3e-31 140.2 136 55.9
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 8.1e-31 137.5 134 48.5
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 5.3e-30 134.8 109 63.3
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 5.3e-30 134.8 109 63.3
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 5.3e-30 134.8 109 63.3
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.8e-29 131.3 136 50.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.9e-28 129.0 121 57.9
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.9e-28 129.0 136 50.0
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.2e-27 125.2 94 63.8
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-26 123.2 124 49.2
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.5e-26 122.1 127 52.8
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-25 119.4 116 55.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.2e-23 111.3 119 50.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.4e-22 110.2 88 61.4
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.5e-21 105.1 138 46.4
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-20 102.8 150 42.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.2e-20 102.8 120 46.7
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 7.1e-19 97.8 115 47.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.6e-18 96.7 136 40.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-17 94.0 89 55.1
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 8.7e-17 90.9 119 38.7
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.9e-16 89.7 76 57.9
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 8.2e-15 84.3 71 60.6
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-14 82.8 59 66.1
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.9e-11 73.2 70 57.1
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 9.4e-11 70.9 74 50.0
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 6.1e-10 68.2 69 46.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-07 60.1 50 58.0
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-07 59.7 50 56.0
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-07 59.7 50 56.0
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 4.8e-07 58.5 50 56.0
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-06 57.4 50 56.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.4e-06 57.0 107 34.6
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-06 55.5 50 52.0


User provided reference genes

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