Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1080500 Malus domestica HOM05D004490 ORTHO05D005353 2.7e-25 117.9 59 100.0
MD04G1003500 Malus domestica HOM05D004490 ORTHO05D005353 1.3e-11 72.4 40 90.0
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 3.2e-10 67.8 41 82.9
Prupe.8G058000 Prunus persica HOM05D004490 ORTHO05D005353 4.2e-10 67.4 40 82.5
Atru.chr12.1269 Acer truncatum HOM05D004490 ORTHO05D005353 7.2e-10 66.6 44 75.0
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 9.4e-10 66.2 40 82.5
Peaxi162Scf00848g00115 Petunia axillaris HOM05D004490 ORTHO05D005353 1.6e-09 65.5 40 77.5
Thecc.08G183200 Theobroma cacao HOM05D004490 ORTHO05D005353 1.6e-09 65.5 42 76.2
TAR208G0002 Trochodendron aralioides HOM05D004490 ORTHO05D005353 2.7e-09 64.7 46 67.4
Gorai.013G140400 Gossypium raimondii HOM05D004490 ORTHO05D005353 3.6e-09 64.3 42 73.8
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 4.7e-09 63.9 40 80.0
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 4.7e-09 63.9 40 80.0
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 4.7e-09 63.9 40 80.0
ClCG09G010540 Citrullus lanatus HOM05D004490 ORTHO05D005353 4.7e-09 63.9 42 71.4
MELO3C024104.2 Cucumis melo HOM05D004490 ORTHO05D005353 4.7e-09 63.9 42 71.4
Duzib177G0006 Durio zibethinus HOM05D004490 ORTHO05D005353 4.7e-09 63.9 42 73.8
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 4.7e-09 63.9 40 80.0
Sp6g08010 Schrenkiella parvula HOM05D004490 ORTHO05D005353 4.7e-09 63.9 40 80.0
Gohir.A13G121400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 6.1e-09 63.5 35 85.7
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 6.1e-09 63.5 42 73.8
CiPaw.16G061300 Carya illinoinensis HOM05D004490 ORTHO05D005353 7.9e-09 63.2 40 80.0
Ciclev10000724m.g Citrus clementina HOM05D004490 ORTHO05D005353 7.9e-09 63.2 42 71.4
Medtr1g096410 Medicago truncatula HOM05D004490 ORTHO05D005353 7.9e-09 63.2 47 57.4
Oeu021013.3 Olea europaea HOM05D004490 ORTHO05D005353 7.9e-09 63.2 40 77.5
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 1.4e-08 62.4 40 75.0
CsaV3_7G024020 Cucumis sativus L. HOM05D004490 ORTHO05D005353 1.4e-08 62.4 42 69.0
Dinv41710 Davidia involucrata HOM05D004490 ORTHO05D005353 1.4e-08 62.4 40 77.5
TPR.G8816 Trifolium pratense HOM05D004490 ORTHO05D005353 1.4e-08 62.4 45 62.2
Hma1.2p1_0363F.1_g136650 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 1.8e-08 62.0 44 68.2
Hma1.2p1_0363F.1_g136660 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 1.8e-08 62.0 44 68.2
Manes.02G191800 Manihot esculenta HOM05D004490 ORTHO05D005353 1.8e-08 62.0 42 73.8
Sed0010515 Sechium edule HOM05D004490 ORTHO05D005353 1.8e-08 62.0 42 66.7
Sc23g0001210 Simmondsia chinensis HOM05D004490 ORTHO05D005353 1.8e-08 62.0 42 71.4
Aa31LG9G14890 Aethionema arabicum HOM05D004490 ORTHO05D005353 2.3e-08 61.6 42 76.2
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 2.3e-08 61.6 40 77.5
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 2.3e-08 61.6 40 77.5
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 2.3e-08 61.6 40 77.5
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 2.3e-08 61.6 40 77.5
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 2.3e-08 61.6 35 85.7
FAN07G2233 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.3e-08 61.6 40 77.5
FAN17G1649 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.3e-08 61.6 40 77.5
Glyma.10G216200 Glycine max HOM05D004490 ORTHO05D005353 2.3e-08 61.6 42 66.7
RcHm_v2.0_Chr4g0398261 Rosa chinensis HOM05D004490 ORTHO05D005353 2.3e-08 61.6 35 85.7
VMungo0720G0360 Vigna mungo HOM05D004490 ORTHO05D005353 2.3e-08 61.6 42 69.0
CSS0029963 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 3.0e-08 61.2 46 63.0
FvH4_4g06470 Fragaria vesca HOM05D004490 ORTHO05D005353 3.0e-08 61.2 40 77.5
FAN12G1529 Fragaria x ananassa HOM05D004490 ORTHO05D005353 3.0e-08 61.2 40 77.5
Gohir.D13G125400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 3.0e-08 61.2 42 71.4
Potri.019G083700 Populus trichocarpa HOM05D004490 ORTHO05D005353 3.9e-08 60.8 40 77.5
Sabra19G0095100 Salix brachista HOM05D004490 ORTHO05D005353 3.9e-08 60.8 40 77.5
Solyc11g018670.3 Solanum lycopersicum HOM05D004490 ORTHO05D005353 3.9e-08 60.8 40 72.5
Sopen11g009650 Solanum pennellii HOM05D004490 ORTHO05D005353 3.9e-08 60.8 40 72.5
MSTRG.1522 Avicennia marina HOM05D004490 ORTHO05D005353 5.1e-08 60.5 35 82.9
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 5.1e-08 60.5 42 69.0
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 5.1e-08 60.5 42 64.3
Nitab4.5_0000277g0020 Nicotiana tabacum HOM05D004490 ORTHO05D005353 5.1e-08 60.5 40 70.0
Nitab4.5_0002074g0010 Nicotiana tabacum HOM05D004490 ORTHO05D005353 5.1e-08 60.5 40 70.0
Oeu039613.1 Olea europaea HOM05D004490 ORTHO05D005353 5.1e-08 60.5 40 75.0
Psat6g187400 Pisum sativum HOM05D004490 ORTHO05D005353 5.1e-08 60.5 43 62.8
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 5.1e-08 60.5 40 75.0
vmacro11670 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 5.1e-08 60.5 35 82.9
Nn5g27710 Nelumbo nucifera HOM05D004490 ORTHO05D005353 6.7e-08 60.1 44 68.2
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 8.8e-08 59.7 41 65.9
PGR102G0893 Punica granatum HOM05D004490 ORTHO05D005353 8.8e-08 59.7 40 75.0
Prupe.3G081100 Prunus persica HOM05D004490 ORTHO05D005353 1.1e-07 59.3 37 81.1
CAN.G905.35 Capsicum annuum HOM05D004490 ORTHO05D005353 1.5e-07 58.9 40 70.0
CDE08G1471 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.5e-07 58.9 35 80.0
Cc10_g11460 Coffea canephora HOM05D004490 ORTHO05D005353 1.5e-07 58.9 40 72.5
Migut.C01248 Erythranthe guttata HOM05D004490 ORTHO05D005353 1.5e-07 58.9 35 80.0
Gohir.A04G142550 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.5e-07 58.9 40 70.0
Phvul.007G089700 Phaseolus vulgaris HOM05D004490 ORTHO05D005353 1.5e-07 58.9 42 66.7
unitig_699.g19825 Utricularia gibba HOM05D004490 ORTHO05D005353 1.5e-07 58.9 35 80.0
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 2.0e-07 58.5 37 75.7
SalBow4G3000 Salvia bowleyana HOM05D004490 ORTHO05D005353 2.0e-07 58.5 35 80.0
SalBow7G0993 Salvia bowleyana HOM05D004490 ORTHO05D005353 2.0e-07 58.5 35 80.0
Ca_10614_v3 Cicer arietinum L. HOM05D004490 ORTHO05D005353 2.6e-07 58.2 45 57.8
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 3.3e-07 57.8 41 63.4
EL10Ac1g00080 Beta vulgaris HOM05D004490 ORTHO05D005353 5.7e-07 57.0 42 64.3
Lalb_Chr21g0305821 Lupinus albus HOM05D004490 ORTHO05D005353 5.7e-07 57.0 46 58.7
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 5.7e-07 57.0 37 70.3
Hund27085 Selenicereus undatus HOM05D004490 ORTHO05D005353 5.7e-07 57.0 39 69.2
HPP92_020159 Vanilla planifolia HOM05D004490 ORTHO05D005353 5.7e-07 57.0 37 70.3
HPP92_020178 Vanilla planifolia HOM05D004490 ORTHO05D005353 5.7e-07 57.0 37 70.3
CANSAT64G2929 Cannabis sativa HOM05D004490 ORTHO05D005353 7.4e-07 56.6 42 66.7
HanXRQChr10g0290501 Helianthus annuus HOM05D004490 ORTHO05D005353 7.4e-07 56.6 40 70.0
Ah.05g178090 Amaranthus hybridus HOM05D004490 ORTHO05D005353 1.3e-06 55.8 42 61.9
Aqoxy2G03181 Aquilegia oxysepala HOM05D004490 ORTHO05D005353 1.3e-06 55.8 44 61.4
EL10Ac1g00082 Beta vulgaris HOM05D004490 ORTHO05D005353 1.3e-06 55.8 42 61.9
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 1.7e-06 55.5 37 75.7
Rhsim11G0059700 Rhododendron simsii HOM05D004490 ORTHO05D005353 2.2e-06 55.1 31 83.9
ECA234G1973 Erigeron canadensis HOM05D004490 ORTHO05D005353 2.8e-06 54.7 40 67.5
Lsat_1_v5_gn_5_105541 Lactuca sativa HOM05D004490 ORTHO05D005353 3.7e-06 54.3 40 67.5
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 3.7e-06 54.3 35 74.3
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 4.8e-06 53.9 35 71.4
SHI41020 Sapria himalayana HOM05D004490 ORTHO05D005353 6.3e-06 53.5 35 68.6
SEGI_26294 Sequoiadendron giganteum HOM05D004490 ORTHO05D005353 8.2e-06 53.1 42 61.9


User provided reference genes

Program Settings