Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1063100 Malus domestica HOM05D008447 ORTHO05D010638 7.3e-300 1033.1 517 100.0
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 1.5e-260 902.5 512 87.5
Cfa016881 Carpinus fangiana HOM05D008447 ORTHO05D010638 8.0e-214 747.3 493 76.1
Thecc.05G165700 Theobroma cacao HOM05D008447 ORTHO05D010638 5.9e-209 731.1 512 73.8
COL.COLO4_28736 Corchorus olitorius HOM05D008447 ORTHO05D010638 6.1e-206 721.1 512 71.7
Dinv18105 Davidia involucrata HOM05D008447 ORTHO05D010638 8.0e-206 720.7 511 71.2
Ciclev10004787m.g Citrus clementina HOM05D008447 ORTHO05D010638 2.6e-204 715.7 512 71.5
Atru.chr1.942 Acer truncatum HOM05D008447 ORTHO05D010638 5.7e-204 714.5 492 73.2
CANSAT80G0811 Cannabis sativa HOM05D008447 ORTHO05D010638 2.1e-198 696.0 511 69.9
CANSAT80G2072 Cannabis sativa HOM05D008447 ORTHO05D010638 2.8e-198 695.7 511 69.5
GSVIVG01033352001 Vitis vinifera HOM05D008447 ORTHO05D010638 9.8e-196 687.2 466 72.5
TAR369G0905 Trochodendron aralioides HOM05D008447 ORTHO05D010638 2.9e-195 685.6 482 71.8
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 2.4e-194 682.6 512 69.1
Haze_19941 Corylus avellana HOM05D008447 ORTHO05D010638 2.1e-190 669.5 500 69.8
Nn7g36103 Nelumbo nucifera HOM05D008447 ORTHO05D010638 3.6e-182 642.1 482 66.8
Rhsim04G0099000 Rhododendron simsii HOM05D008447 ORTHO05D010638 3.6e-182 642.1 575 60.0
Aqoxy1G00302 Aquilegia oxysepala HOM05D008447 ORTHO05D010638 2.0e-180 636.3 474 67.1
Migut.J01799 Erythranthe guttata HOM05D008447 ORTHO05D010638 5.8e-180 634.8 464 69.0
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 1.3e-176 623.6 480 64.0
PGR004G0530 Punica granatum HOM05D008447 ORTHO05D010638 1.7e-176 623.2 515 62.5
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.6e-166 589.0 480 65.6
PGSC0003DMG400028389 Solanum tuberosum HOM05D008447 ORTHO05D010638 3.9e-160 568.9 482 60.2
Sopen05g007620 Solanum pennellii HOM05D008447 ORTHO05D010638 6.7e-160 568.2 487 59.8
Solyc05g012800.1 Solanum lycopersicum HOM05D008447 ORTHO05D010638 6.2e-158 561.6 487 59.1
Cpa.g.sc85.118 Carica papaya HOM05D008447 ORTHO05D010638 6.9e-157 558.1 502 60.0
HPP92_023777 Vanilla planifolia HOM05D008447 ORTHO05D010638 6.4e-155 551.6 474 58.6
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 7.6e-148 528.1 379 70.2
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 8.4e-147 524.6 404 68.6
Peaxi162Scf00285g00227 Petunia axillaris HOM05D008447 ORTHO05D010638 8.4e-147 524.6 483 58.4
Nitab4.5_0008022g0020 Nicotiana tabacum HOM05D008447 ORTHO05D010638 7.6e-140 501.5 512 53.5
Nitab4.5_0000016g0020 Nicotiana tabacum HOM05D008447 ORTHO05D010638 5.9e-132 475.3 512 51.0
SMO367G0387 Selaginella moellendorffii HOM05D008447 ORTHO05D010638 3.7e-126 456.1 489 49.1
SMO275G0044 Selaginella moellendorffii HOM05D008447 ORTHO05D010638 1.4e-125 454.1 484 49.0
Mapoly0099s0027 Marchantia polymorpha HOM05D008447 ORTHO05D010638 1.8e-125 453.8 479 50.3
Pp3c10_15450 Physcomitrium patens HOM05D008447 ORTHO05D010638 6.7e-120 435.3 473 47.8
CSS0040904 Camellia sinensis var. sinensis HOM05D008447 ORTHO05D010638 1.1e-117 427.9 440 54.1
AagrBONN_evm.TU.Sc2ySwM_228.434 Anthoceros agrestis HOM05D008447 ORTHO05D010638 5.9e-116 422.2 448 50.2
Actinidia17252 Actinidia chinensis HOM05D008447 ORTHO05D010638 1.4e-112 411.0 341 62.5
MBI01_g36431_MAGBIO Magnolia biondii HOM05D008447 ORTHO05D010638 2.2e-110 403.7 350 61.4
Hma1.2p1_0856F.1_g229060 Hydrangea macrophylla HOM05D008447 ORTHO05D010638 2.4e-101 373.6 301 64.8
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 2.3e-72 277.3 515 36.9
QL07p022618 Quercus lobata HOM05D008447 ORTHO05D010638 7.5e-71 272.3 698 31.2
RcHm_v2.0_Chr3g0480711 Rosa chinensis HOM05D008447 ORTHO05D010638 6.4e-70 269.2 158 81.0
QL07p022609 Quercus lobata HOM05D008447 ORTHO05D010638 4.6e-68 263.1 193 67.9
RcHm_v2.0_Chr3g0480721 Rosa chinensis HOM05D008447 ORTHO05D010638 5.8e-47 193.0 155 72.3
CBR_g675 Chara braunii HOM05D008447 ORTHO05D010638 5.4e-45 186.4 224 42.4
Actinidia17253 Actinidia chinensis HOM05D008447 ORTHO05D010638 7.6e-31 139.4 95 71.6
Haze_19939 Corylus avellana HOM05D008447 ORTHO05D010638 6.9e-24 116.3 73 74.0
CSS0021541 Camellia sinensis var. sinensis HOM05D008447 ORTHO05D010638 3.6e-20 104.0 67 71.6
SEGI_40265 Sequoiadendron giganteum HOM05D008447 ORTHO05D010638 6.3e-17 93.2 100 45.0
SEGI_28051 Sequoiadendron giganteum HOM05D008447 ORTHO05D010638 1.4e-16 92.0 71 66.2
MBI08_g35877_MAGBIO Magnolia biondii HOM05D008447 ORTHO05D010638 4.1e-16 90.5 64 60.9
CBR_g669 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-11 73.2 85 49.4
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.8e-08 65.1 281 27.4
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 2.4e-08 64.7 262 25.6
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 9.1e-08 62.8 281 26.3
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.0e-07 61.6 280 24.6
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.6e-07 61.2 281 27.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.6e-07 61.2 281 26.7
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.5e-07 60.8 281 27.0
CBR_g671 Chara braunii HOM05D008447 ORTHO05D010638 4.5e-07 60.5 52 55.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 4.5e-07 60.5 281 26.7
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 5.9e-07 60.1 281 26.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 7.7e-07 59.7 287 25.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 7.7e-07 59.7 287 25.4
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.0e-06 59.3 285 26.3
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 1.0e-06 59.3 278 25.9
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.0e-06 59.3 288 25.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.7e-06 58.5 281 25.6
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.7e-06 58.5 271 27.3
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 1.7e-06 58.5 285 26.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 2.2e-06 58.2 288 25.0
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 2.9e-06 57.8 285 24.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.9e-06 57.8 288 25.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.8e-06 57.4 288 25.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 5.0e-06 57.0 288 25.0
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 5.0e-06 57.0 283 24.7
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 5.0e-06 57.0 288 25.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.0e-06 57.0 256 25.4
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 6.5e-06 56.6 271 25.5
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 6.5e-06 56.6 271 26.9
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 8.5e-06 56.2 288 25.0
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 8.5e-06 56.2 281 25.6
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 8.5e-06 56.2 288 25.0


User provided reference genes

Program Settings