Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1060400 Malus domestica HOM05D006621 ORTHO05D008425 1.0e-126 456.8 248 100.0
MD14G1060600 Malus domestica HOM05D006621 ORTHO05D008425 5.7e-117 424.5 248 92.7
Prupe.7G073900 Prunus persica HOM05D006621 ORTHO05D008425 2.3e-110 402.5 249 88.0
FAN02G3731 Fragaria x ananassa HOM05D006621 ORTHO05D008425 7.0e-107 391.0 249 85.9
FvH4_6g22670 Fragaria vesca HOM05D006621 ORTHO05D008425 2.7e-106 389.0 249 85.9
FAN14G1344 Fragaria x ananassa HOM05D006621 ORTHO05D008425 2.7e-106 389.0 249 85.9
FAN05G4150 Fragaria x ananassa HOM05D006621 ORTHO05D008425 1.3e-105 386.7 249 85.1
RcHm_v2.0_Chr3g0480241 Rosa chinensis HOM05D006621 ORTHO05D008425 6.1e-103 377.9 246 84.1
FAN09G2006 Fragaria x ananassa HOM05D006621 ORTHO05D008425 8.8e-102 374.0 249 82.7
FAN14G0291 Fragaria x ananassa HOM05D006621 ORTHO05D008425 9.8e-101 370.5 249 83.1
Thecc.05G168600 Theobroma cacao HOM05D006621 ORTHO05D008425 1.3e-92 343.6 260 74.2
COL.COLO4_36135 Corchorus olitorius HOM05D006621 ORTHO05D008425 4.1e-91 338.6 260 73.8
QL07p023160 Quercus lobata HOM05D006621 ORTHO05D008425 5.4e-91 338.2 259 73.4
Manes.09G032200 Manihot esculenta HOM05D006621 ORTHO05D008425 7.0e-91 337.8 260 72.3
Cfa016900 Carpinus fangiana HOM05D006621 ORTHO05D008425 9.2e-91 337.4 247 76.1
Duzib128G0108 Durio zibethinus HOM05D006621 ORTHO05D008425 3.5e-90 335.5 260 73.5
CANSAT64G2439 Cannabis sativa HOM05D006621 ORTHO05D008425 2.3e-89 332.8 254 75.2
Haze_19963 Corylus avellana HOM05D006621 ORTHO05D008425 9.5e-88 327.4 242 76.0
CiPaw.09G032000 Carya illinoinensis HOM05D006621 ORTHO05D008425 1.2e-87 327.0 259 71.0
Gohir.D09G123264 Gossypium hirsutum HOM05D006621 ORTHO05D008425 1.2e-87 327.0 257 71.6
Eucgr.K01826 Eucalyptus grandis HOM05D006621 ORTHO05D008425 2.8e-87 325.9 250 74.0
Glyma.02G176900 Glycine max HOM05D006621 ORTHO05D008425 2.8e-87 325.9 251 72.1
Gorai.006G141700 Gossypium raimondii HOM05D006621 ORTHO05D008425 3.6e-87 325.5 257 71.2
Atru.chr8.1052 Acer truncatum HOM05D006621 ORTHO05D008425 4.7e-87 325.1 260 71.5
Lalb_Chr21g0317041 Lupinus albus HOM05D006621 ORTHO05D008425 6.1e-87 324.7 255 71.0
Gohir.A09G126800 Gossypium hirsutum HOM05D006621 ORTHO05D008425 8.0e-87 324.3 258 70.9
TPR.G24898 Trifolium pratense HOM05D006621 ORTHO05D008425 8.0e-87 324.3 254 72.4
Dinv24092 Davidia involucrata HOM05D006621 ORTHO05D008425 1.0e-86 323.9 260 71.5
Potri.006G059500 Populus trichocarpa HOM05D006621 ORTHO05D008425 1.0e-86 323.9 260 70.0
Medtr1g053520 Medicago truncatula HOM05D006621 ORTHO05D008425 6.8e-86 321.2 257 70.4
ClCG04G002310 Citrullus lanatus HOM05D006621 ORTHO05D008425 8.9e-86 320.9 252 72.6
GSVIVG01033523001 Vitis vinifera HOM05D006621 ORTHO05D008425 2.0e-85 319.7 246 73.2
Glyma.10G091600 Glycine max HOM05D006621 ORTHO05D008425 2.6e-85 319.3 251 70.9
Ciclev10011385m.g Citrus clementina HOM05D006621 ORTHO05D008425 5.8e-85 318.2 255 71.0
Ca_26117_v3 Cicer arietinum L. HOM05D006621 ORTHO05D008425 2.2e-84 316.2 254 71.7
arahy.Tifrunner.gnm1.ann1.G78CS5 Arachis hypogaea HOM05D006621 ORTHO05D008425 2.9e-84 315.8 249 70.3
VMungo0720G2363 Vigna mungo HOM05D006621 ORTHO05D008425 6.4e-84 314.7 248 70.6
TWI74G0211 Tripterygium wilfordii HOM05D006621 ORTHO05D008425 8.3e-84 314.3 253 71.1
Nn1g01946 Nelumbo nucifera HOM05D006621 ORTHO05D008425 1.9e-83 313.2 255 67.8
PGR142G0547 Punica granatum HOM05D006621 ORTHO05D008425 1.9e-83 313.2 257 69.3
MELO3C008903.2 Cucumis melo HOM05D006621 ORTHO05D008425 2.4e-83 312.8 251 70.5
CSS0004967 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D008425 5.4e-83 311.6 261 67.0
Phvul.007G257900 Phaseolus vulgaris HOM05D006621 ORTHO05D008425 1.6e-82 310.1 248 70.2
Sed0013147 Sechium edule HOM05D006621 ORTHO05D008425 2.0e-82 309.7 251 70.9
CsaV3_4G030430 Cucumis sativus L. HOM05D006621 ORTHO05D008425 2.7e-82 309.3 251 70.5
TAR636G2274 Trochodendron aralioides HOM05D006621 ORTHO05D008425 2.7e-82 309.3 246 71.5
MSTRG.6466 Avicennia marina HOM05D006621 ORTHO05D008425 6.0e-82 308.1 259 66.0
Actinidia38574 Actinidia chinensis HOM05D006621 ORTHO05D008425 7.8e-82 307.8 260 67.3
Sabra06G0042800 Salix brachista HOM05D006621 ORTHO05D008425 2.3e-81 306.2 265 66.8
Rhsim04G0097900 Rhododendron simsii HOM05D006621 ORTHO05D008425 3.0e-81 305.8 260 66.9
THA.LOC104799308 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 1.9e-80 303.1 255 68.2
vmacro09106 Vaccinium macrocarpon HOM05D006621 ORTHO05D008425 4.3e-80 302.0 260 66.9
Hma1.2p1_0005F.1_g004290 Hydrangea macrophylla HOM05D006621 ORTHO05D008425 5.6e-80 301.6 256 68.0
Sp6g36030 Schrenkiella parvula HOM05D006621 ORTHO05D008425 9.5e-80 300.8 248 67.3
CARHR206340 Cardamine hirsuta HOM05D006621 ORTHO05D008425 1.2e-79 300.4 248 67.3
Carub.0006s0572 Capsella rubella HOM05D006621 ORTHO05D008425 2.8e-79 299.3 248 66.5
Sc13g0002140 Simmondsia chinensis HOM05D006621 ORTHO05D008425 6.2e-79 298.1 256 67.2
AL6G16950 Arabidopsis lyrata HOM05D006621 ORTHO05D008425 8.0e-79 297.7 248 67.3
Migut.J01819 Erythranthe guttata HOM05D006621 ORTHO05D008425 3.1e-78 295.8 245 65.3
BcaC06g32538 Brassica carinata HOM05D006621 ORTHO05D008425 4.0e-78 295.4 248 66.5
PSO339G6474 Papaver somniferum HOM05D006621 ORTHO05D008425 4.0e-78 295.4 223 69.1
PSO384G1846 Papaver somniferum HOM05D006621 ORTHO05D008425 4.0e-78 295.4 223 69.1
AT5G06830 Arabidopsis thaliana HOM05D006621 ORTHO05D008425 5.2e-78 295.0 248 66.5
Thhalv10013160m.g Eutrema salsugineum HOM05D006621 ORTHO05D008425 6.8e-78 294.7 248 65.7
Lju124A29T46 Lonicera japonica HOM05D006621 ORTHO05D008425 2.6e-77 292.7 250 69.6
Aa31LG11G7690 Aethionema arabicum HOM05D006621 ORTHO05D008425 4.4e-77 292.0 248 66.9
Oeu008113.1 Olea europaea HOM05D006621 ORTHO05D008425 4.4e-77 292.0 243 67.1
Lj5g0023768 Lotus japonicus HOM05D006621 ORTHO05D008425 5.8e-77 291.6 254 67.7
CAN.G691.11 Capsicum annuum HOM05D006621 ORTHO05D008425 8.3e-76 287.7 252 67.1
Cc00_g14610 Coffea canephora HOM05D006621 ORTHO05D008425 3.2e-75 285.8 253 64.4
ECA248G1459 Erigeron canadensis HOM05D006621 ORTHO05D008425 7.0e-75 284.6 245 64.5
arahy.Tifrunner.gnm1.ann1.ZJT11U Arachis hypogaea HOM05D006621 ORTHO05D008425 1.2e-74 283.9 321 54.8
Nitab4.5_0000016g0290 Nicotiana tabacum HOM05D006621 ORTHO05D008425 1.2e-74 283.9 252 64.7
Solyc03g059030.4 Solanum lycopersicum HOM05D006621 ORTHO05D008425 4.6e-74 282.0 252 65.5
Nitab4.5_0003572g0080 Nicotiana tabacum HOM05D006621 ORTHO05D008425 7.8e-74 281.2 252 65.1
Hund19192 Selenicereus undatus HOM05D006621 ORTHO05D008425 1.7e-73 280.0 271 59.0
AUR62024325 Chenopodium quinoa HOM05D006621 ORTHO05D008425 3.9e-73 278.9 227 66.5
Sopen03g013060 Solanum pennellii HOM05D006621 ORTHO05D008425 6.6e-73 278.1 252 64.7
Lsat_1_v5_gn_5_164180 Lactuca sativa HOM05D006621 ORTHO05D008425 8.6e-73 277.7 244 65.2
Aqoxy1G00197 Aquilegia oxysepala HOM05D006621 ORTHO05D008425 1.1e-72 277.3 228 67.1
EL10Ac3g06943 Beta vulgaris HOM05D006621 ORTHO05D008425 5.6e-72 275.0 249 63.1
HanXRQChr01g0009671 Helianthus annuus HOM05D006621 ORTHO05D008425 6.2e-71 271.6 245 63.3
Ah.13g076080 Amaranthus hybridus HOM05D006621 ORTHO05D008425 1.1e-70 270.8 226 67.3
BcaC06g32399 Brassica carinata HOM05D006621 ORTHO05D008425 1.2e-69 267.3 215 68.8
C09p69910 Brassica napus HOM05D006621 ORTHO05D008425 1.2e-69 267.3 215 68.8
BolC9t59734H Brassica oleracea HOM05D006621 ORTHO05D008425 1.2e-69 267.3 215 68.8
A10p29540 Brassica napus HOM05D006621 ORTHO05D008425 2.6e-69 266.2 215 68.8
BraA10t44997Z Brassica rapa HOM05D006621 ORTHO05D008425 2.6e-69 266.2 215 68.8
SalBow6G6334 Salvia bowleyana HOM05D006621 ORTHO05D008425 3.4e-69 265.8 211 69.2
Zm00001eb381660 Zea mays HOM05D006621 ORTHO05D008425 4.1e-67 258.8 231 65.4
Zm00001eb381720 Zea mays HOM05D006621 ORTHO05D008425 4.1e-67 258.8 231 65.4
CDE10G0898 Ceratophyllum demersum HOM05D006621 ORTHO05D008425 5.4e-67 258.5 249 59.8
HPP92_015468 Vanilla planifolia HOM05D006621 ORTHO05D008425 1.2e-66 257.3 237 59.5
ATR0605G120 Amborella trichopoda HOM05D006621 ORTHO05D008425 6.0e-66 255.0 220 63.2
Os06g0320100 Oryza sativa ssp. japonica HOM05D006621 ORTHO05D008425 1.0e-65 254.2 224 64.3
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 4.9e-60 235.3 230 59.6
AUR62012064 Chenopodium quinoa HOM05D006621 ORTHO05D008425 9.0e-54 214.5 214 57.9
CAN.G654.6 Capsicum annuum HOM05D006621 ORTHO05D008425 3.8e-52 209.1 151 72.8
Eucgr.D02420 Eucalyptus grandis HOM05D006621 ORTHO05D008425 7.8e-50 201.4 208 58.2
Oeu033745.1 Olea europaea HOM05D006621 ORTHO05D008425 1.5e-48 197.2 173 62.4
Psat6g126120 Pisum sativum HOM05D006621 ORTHO05D008425 1.2e-45 187.6 192 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2467 Anthoceros agrestis HOM05D006621 ORTHO05D008425 6.0e-42 175.3 219 48.4
RcHm_v2.0_Chr3g0476251 Rosa chinensis HOM05D006621 ORTHO05D008425 9.6e-40 167.9 157 65.6
Mapoly0080s0041 Marchantia polymorpha HOM05D006621 ORTHO05D008425 9.0e-38 161.4 233 42.1
Peaxi162Scf00258g00117 Petunia axillaris HOM05D006621 ORTHO05D008425 1.2e-37 161.0 170 59.4
Pp3c23_21740 Physcomitrium patens HOM05D006621 ORTHO05D008425 3.8e-36 156.0 214 43.9
SMO134G0088 Selaginella moellendorffii HOM05D006621 ORTHO05D008425 2.5e-35 153.3 242 39.3
Lsat_1_v5_gn_1_107121 Lactuca sativa HOM05D006621 ORTHO05D008425 2.5e-32 143.3 201 50.7
CBR_g3749 Chara braunii HOM05D006621 ORTHO05D008425 8.2e-31 138.3 220 40.5
CSS0033542 Camellia sinensis var. sinensis HOM05D006621 ORTHO05D043305 4.1e-14 82.8 54 81.5
Cpa.g.sc85.87 Carica papaya HOM05D006621 ORTHO05D008425 1.5e-13 80.9 92 53.3
Cre01.g047229 Chlamydomonas reinhardtii HOM05D006621 ORTHO05D008425 3.2e-11 73.2 168 29.8
THA.LOC104799305 Tarenaya hassleriana HOM05D006621 ORTHO05D008425 8.8e-09 65.1 64 57.8
DCAR_028612 Daucus carota HOM05D006621 ORTHO05D008425 1.1e-08 64.7 41 75.6
DCAR_019796 Daucus carota HOM05D006621 ORTHO05D008425 1.1e-06 58.2 188 31.4
RcHm_v2.0_Chr3g0480231 Rosa chinensis HOM05D006621 ORTHO05D043305 4.1e-06 56.2 41 75.6


User provided reference genes

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