Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 6.1e-166 587.4 298 100.0
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 1.1e-133 480.3 301 83.7
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 3.5e-129 465.3 280 84.3
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.3e-119 431.8 311 73.6
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.6e-118 429.9 312 73.1
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 3.6e-118 428.7 303 74.3
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 8.9e-117 424.1 303 75.6
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 7.3e-111 404.4 307 72.3
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 1.3e-110 403.7 280 76.4
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 2.8e-110 402.5 301 69.1
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 4.4e-108 395.2 307 68.4
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.4e-108 395.2 292 72.9
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 9.9e-108 394.0 304 69.1
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 1.7e-107 393.3 303 68.3
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 1.7e-107 393.3 304 67.1
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 8.4e-107 391.0 306 67.3
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 5.4e-106 388.3 300 66.3
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 1.2e-105 387.1 307 66.8
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 3.5e-105 385.6 301 68.1
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 7.9e-105 384.4 299 66.9
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 1.7e-104 383.3 299 66.9
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 5.1e-104 381.7 305 65.2
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 8.7e-104 380.9 302 66.9
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.5e-103 380.2 301 67.4
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.9e-103 379.8 229 79.9
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 2.5e-103 379.4 306 66.0
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 7.4e-103 377.9 302 67.5
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 7.4e-103 377.9 308 68.5
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 1.6e-102 376.7 303 66.3
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 2.1e-102 376.3 310 66.8
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 4.8e-102 375.2 301 65.4
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 6.2e-102 374.8 202 84.2
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 6.2e-102 374.8 300 66.0
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 2.4e-101 372.9 300 65.3
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 3.1e-101 372.5 236 77.5
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 1.5e-100 370.2 303 67.0
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 1.5e-100 370.2 300 65.0
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 2.0e-100 369.8 299 64.5
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 4.5e-100 368.6 297 65.7
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 3.8e-99 365.5 301 67.1
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 6.4e-99 364.8 308 64.6
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 8.4e-99 364.4 303 63.0
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 8.4e-99 364.4 202 83.2
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 8.4e-99 364.4 316 61.7
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 1.1e-98 364.0 235 75.3
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 3.2e-98 362.5 301 64.8
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 9.3e-98 360.9 300 65.0
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 1.2e-97 360.5 299 64.2
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 1.2e-97 360.5 232 74.6
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 1.6e-97 360.1 299 64.5
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 1.6e-97 360.1 234 73.9
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 4.6e-97 358.6 308 62.7
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 4.6e-97 358.6 289 65.1
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 6.0e-97 358.2 297 64.3
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 7.9e-97 357.8 304 62.5
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 1.0e-96 357.5 300 62.3
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 1.8e-96 356.7 298 63.1
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 3.0e-96 355.9 300 63.7
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 3.0e-96 355.9 300 63.7
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 5.1e-96 355.1 238 73.5
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 5.1e-96 355.1 281 67.3
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 8.7e-96 354.4 303 61.7
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 1.5e-95 353.6 202 79.2
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 1.9e-95 353.2 202 81.7
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 1.9e-95 353.2 212 79.2
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 2.5e-95 352.8 281 66.5
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 3.3e-95 352.4 280 66.1
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 7.4e-95 351.3 297 63.0
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 7.4e-95 351.3 220 77.3
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 7.4e-95 351.3 286 64.3
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 1.6e-94 350.1 297 62.6
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 2.8e-94 349.4 264 71.2
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 3.7e-94 349.0 237 72.6
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 4.0e-93 345.5 296 62.5
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 5.3e-93 345.1 311 63.3
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 2.0e-92 343.2 296 62.2
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 2.0e-92 343.2 296 62.2
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 2.0e-92 343.2 212 77.4
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 5.8e-92 341.7 296 62.2
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 1.3e-91 340.5 302 62.9
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 1.7e-91 340.1 243 68.7
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 3.8e-91 339.0 303 61.7
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 1.4e-90 337.0 217 76.5
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 4.2e-90 335.5 285 65.3
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 1.3e-88 330.5 277 61.0
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 8.7e-88 327.8 222 70.7
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 1.9e-87 326.6 224 68.8
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 2.5e-87 326.2 305 60.3
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 4.3e-87 325.5 294 61.9
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 5.3e-85 318.5 278 62.6
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 2.0e-84 316.6 208 68.8
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 2.6e-84 316.2 329 56.2
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 7.6e-84 314.7 217 69.6
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.7e-83 313.5 285 58.2
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 5.0e-83 312.0 279 61.6
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 2.5e-82 309.7 263 63.9
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 3.2e-82 309.3 195 69.7
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 3.9e-80 302.4 303 52.5
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 6.7e-80 301.6 304 53.3
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 1.8e-77 293.5 267 59.6
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.8e-77 293.5 210 65.7
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 9.0e-77 291.2 197 67.5
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 3.4e-76 289.3 296 55.4
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 3.8e-75 285.8 163 82.8
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 5.5e-74 282.0 159 80.5
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 7.9e-73 278.1 156 83.3
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 5.1e-72 275.4 159 79.2
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 7.4e-71 271.6 278 56.1
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 2.6e-68 263.1 199 60.8
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 3.4e-68 262.7 151 81.5
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 7.9e-65 251.5 350 46.9
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 1.7e-59 233.8 196 53.1
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 1.7e-59 233.8 141 76.6
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 1.5e-58 230.7 138 79.0
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 2.5e-58 229.9 300 50.0
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 4.7e-57 225.7 124 86.3
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 4.4e-55 219.2 307 46.6
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 2.4e-53 213.4 124 81.5
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 4.5e-52 209.1 200 47.0
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 1.2e-49 201.1 197 53.3
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 1.8e-48 197.2 119 82.4
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 2.3e-48 196.8 111 77.5
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.5e-47 194.1 133 69.2
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 3.5e-44 183.0 147 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 3.2e-42 176.4 141 56.7
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 6.1e-41 172.2 115 74.8
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 6.1e-41 172.2 115 74.8
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 6.8e-32 142.1 158 43.0
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 8.9e-32 141.7 158 48.7
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.2e-30 137.1 90 76.7
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 7.0e-29 132.1 78 80.8
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 7.5e-23 112.1 77 72.7
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 2.7e-20 103.6 107 55.1
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 7.3e-18 95.5 136 50.0
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 1.6e-17 94.4 91 59.3
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 2.0e-15 87.4 63 68.3
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 2.6e-15 87.0 154 33.1
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 2.9e-06 57.0 159 27.7
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.4e-06 55.5 168 28.6


User provided reference genes

Program Settings