Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 3.3e-178 628.2 316 100.0
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 4.3e-162 574.7 316 92.7
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 4.4e-138 495.0 317 82.3
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 3.8e-134 481.9 318 79.2
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 5.0e-134 481.5 314 77.4
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 3.6e-132 475.3 318 77.0
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.4e-131 473.4 294 81.6
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 5.2e-131 471.5 316 75.3
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.5e-130 469.9 302 81.1
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 2.6e-130 469.2 306 77.8
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 2.6e-130 469.2 306 77.8
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 9.8e-130 467.2 320 75.6
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.3e-129 466.8 306 76.5
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.2e-129 466.1 296 78.0
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 6.3e-129 464.5 314 74.8
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 8.3e-129 464.2 316 75.0
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.8e-128 463.0 270 85.2
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 2.4e-128 462.6 306 77.1
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 4.1e-128 461.8 264 85.6
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.0e-127 459.5 329 74.8
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 2.7e-127 459.1 264 84.5
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 3.5e-127 458.8 305 76.1
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 7.7e-127 457.6 316 74.4
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.7e-126 456.4 329 74.2
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.7e-126 456.4 311 76.5
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.3e-126 456.1 297 77.8
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.9e-126 455.7 332 72.3
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.9e-126 455.7 299 78.6
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.8e-126 455.3 289 79.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 6.6e-126 454.5 268 83.2
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.1e-125 453.8 285 79.6
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.1e-125 453.8 332 72.0
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.5e-125 453.4 301 76.4
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.9e-125 453.0 302 75.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.5e-125 452.6 315 73.0
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.3e-125 452.2 286 78.0
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 4.2e-125 451.8 289 78.5
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 5.5e-125 451.4 279 81.0
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 7.2e-125 451.1 266 83.5
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 9.5e-125 450.7 287 78.0
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 9.5e-125 450.7 271 80.8
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-124 449.9 279 80.6
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.6e-124 449.9 272 81.2
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.6e-124 449.9 316 72.8
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.1e-124 449.5 281 79.4
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.7e-124 448.4 270 83.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 8.0e-124 447.6 267 82.4
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.0e-124 447.6 271 80.4
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.4e-123 446.8 267 82.8
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.4e-123 446.8 298 77.2
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.4e-123 446.8 265 82.6
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.8e-123 446.4 285 78.9
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 2.3e-123 446.0 267 81.6
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.3e-123 446.0 302 75.2
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.0e-123 445.3 282 78.0
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 4.0e-123 445.3 295 76.6
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 5.2e-123 444.9 265 81.1
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 6.8e-123 444.5 271 80.4
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 6.8e-123 444.5 285 77.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 8.9e-123 444.1 265 83.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 8.9e-123 444.1 304 76.0
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.5e-122 443.4 310 73.2
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.5e-122 443.4 285 77.5
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.5e-122 443.4 285 76.1
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 2.6e-122 442.6 311 73.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.4e-122 442.2 310 71.3
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.4e-122 441.8 265 81.1
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 5.7e-122 441.4 320 72.5
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 5.7e-122 441.4 294 78.2
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 9.8e-122 440.7 285 76.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.3e-121 440.3 265 82.6
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.3e-121 440.3 295 73.6
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.2e-121 439.5 264 82.2
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.2e-121 439.5 264 82.2
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.2e-121 439.5 304 71.1
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.2e-121 439.5 272 78.3
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.7e-121 438.7 285 76.5
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.3e-121 438.0 271 79.7
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.1e-120 437.2 316 71.2
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 5.4e-120 434.9 260 85.0
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 9.2e-120 434.1 305 71.5
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.2e-119 433.7 304 69.4
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.7e-119 432.6 292 75.0
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-118 430.3 291 74.6
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 2.9e-118 429.1 275 78.5
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.3e-117 425.6 307 69.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 9.5e-117 424.1 291 73.9
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.4e-115 420.2 253 81.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.5e-114 416.8 304 69.1
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 8.3e-113 411.0 297 72.1
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 4.1e-112 408.7 249 81.5
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 6.0e-111 404.8 307 66.4
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-110 403.7 287 74.2
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 5.6e-109 398.3 261 75.1
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 2.8e-108 396.0 232 81.5
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.7e-108 395.2 295 69.2
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 8.0e-108 394.4 289 68.5
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-107 393.3 267 75.3
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.4e-106 389.0 296 69.3
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.4e-106 388.7 277 70.0
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.8e-106 388.3 351 60.4
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.4e-104 383.6 301 65.4
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.9e-104 383.3 258 74.8
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 9.2e-104 380.9 234 79.9
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 8.6e-102 374.4 273 67.4
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 2.5e-101 372.9 265 70.2
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 3.1e-99 365.9 295 67.1
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 6.8e-99 364.8 265 68.3
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 5.4e-96 355.1 292 61.6
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 3.5e-95 352.4 261 69.0
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 7.8e-95 351.3 267 69.7
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.0e-94 350.9 263 67.3
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.6e-94 348.2 251 71.7
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.9e-93 346.7 256 71.1
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 8.1e-92 341.3 310 60.6
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 9.9e-90 334.3 219 75.8
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.2e-88 329.3 268 61.2
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.2e-87 327.4 264 61.4
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.6e-87 327.0 264 64.0
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.8e-84 316.2 273 64.5
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 8.1e-84 314.7 185 84.9
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.7e-81 307.0 177 83.6
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 6.4e-81 305.1 271 61.3
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.4e-81 305.1 242 65.7
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.7e-71 273.1 183 72.1
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.9e-69 266.9 183 71.0
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.4e-67 260.0 183 73.2
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 5.8e-66 255.4 170 77.1
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.0e-65 254.6 177 73.4
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.9e-65 253.1 154 78.6
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 5.7e-61 238.8 145 80.0
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.0e-57 228.0 261 47.9
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-53 214.5 168 67.9
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 1.9e-53 213.8 121 84.3
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 1.9e-53 213.8 121 84.3
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 1.4e-51 207.6 150 70.0
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.8e-51 207.2 119 84.0
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.8e-51 207.2 119 83.2
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 5.7e-45 185.7 115 80.9
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.5e-42 177.6 108 83.3
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 2.0e-37 160.6 279 38.7
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.3e-37 159.8 125 58.4
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 5.7e-37 159.1 110 70.0
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.8e-36 156.0 142 56.3
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 5.9e-34 149.1 97 77.3
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.2e-33 147.1 129 61.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.5e-32 144.4 116 62.9
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.2e-31 141.4 157 49.0
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 8.0e-31 138.7 77 88.3
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 2.3e-30 137.1 118 62.7
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.5e-29 134.4 194 41.8
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 4.2e-24 116.3 108 63.0
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.6e-23 113.2 72 75.0
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 5.2e-22 109.4 70 78.6
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.8e-20 102.8 69 71.0
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 6.5e-17 92.4 55 78.2
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 6.5e-17 92.4 55 78.2
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.5e-16 91.3 197 37.1
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.6e-15 86.7 70 64.3
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 2.6e-13 80.5 46 84.8
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.3e-06 57.4 248 23.4
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.3e-06 57.4 34 70.6


User provided reference genes

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