Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 3.3e-76 288.5 169 100.0
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 6.3e-67 257.7 169 88.8
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 4.2e-55 218.4 171 80.1
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 2.5e-47 192.6 171 75.4
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.5e-47 192.6 171 74.9
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.6e-46 189.9 147 72.1
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.8e-45 186.4 162 75.3
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 5.7e-44 181.4 172 73.8
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 4.1e-42 175.3 157 73.9
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.9e-39 166.4 152 71.7
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.8e-38 162.5 164 67.1
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.5e-36 156.8 126 76.2
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 4.4e-36 155.2 122 81.1
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 9.8e-36 154.1 161 65.8
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 3.7e-35 152.1 153 59.5
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.8e-34 149.8 99 76.8
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.8e-34 149.8 153 68.0
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.1e-34 149.1 165 64.8
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 4.1e-34 148.7 109 70.6
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 5.4e-34 148.3 141 69.5
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 5.4e-34 148.3 159 61.6
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 5.4e-34 148.3 142 61.3
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 7.0e-34 147.9 134 62.7
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 4.5e-33 145.2 123 76.4
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 4.5e-33 145.2 121 76.9
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 5.9e-33 144.8 151 64.2
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 7.8e-33 144.4 136 73.5
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.0e-32 144.1 166 58.4
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.0e-32 144.1 154 63.6
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.7e-32 143.3 168 60.7
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 2.3e-32 142.9 121 78.5
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 5.0e-32 141.7 162 56.2
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 6.6e-32 141.4 120 75.0
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 6.6e-32 141.4 103 83.5
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.5e-31 140.2 121 76.0
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 2.5e-31 139.4 103 82.5
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.5e-31 139.4 80 80.0
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 3.3e-31 139.0 154 64.9
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 4.3e-31 138.7 130 66.9
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 4.3e-31 138.7 102 85.3
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 7.3e-31 137.9 100 75.0
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 7.3e-31 137.9 84 77.4
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 7.3e-31 137.9 169 58.6
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 9.5e-31 137.5 160 60.6
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.6e-30 136.7 151 56.3
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.6e-30 136.7 99 70.7
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 4.7e-30 135.2 148 62.8
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 4.7e-30 135.2 139 66.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 6.1e-30 134.8 171 57.9
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 6.1e-30 134.8 113 71.7
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 8.0e-30 134.4 161 62.1
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.0e-29 134.0 100 84.0
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.4e-29 133.7 161 58.4
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.8e-29 133.3 142 57.0
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.8e-29 133.3 116 63.8
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 2.3e-29 132.9 113 69.0
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 6.8e-29 131.3 83 77.1
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 6.8e-29 131.3 120 75.0
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 8.9e-29 131.0 152 52.6
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 8.9e-29 131.0 113 67.3
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.2e-28 130.6 83 74.7
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.2e-28 130.6 83 74.7
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.5e-28 130.2 115 62.6
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 2.0e-28 129.8 152 52.6
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.0e-28 129.8 99 69.7
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.6e-28 129.4 141 56.0
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.6e-28 129.4 140 52.1
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.6e-28 129.4 114 63.2
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 3.4e-28 129.0 146 56.2
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 3.4e-28 129.0 140 53.6
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 4.4e-28 128.6 93 71.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 4.4e-28 128.6 96 83.3
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.4e-28 128.6 115 59.1
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 5.8e-28 128.3 115 59.1
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 5.8e-28 128.3 99 68.7
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 7.5e-28 127.9 139 51.8
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 7.5e-28 127.9 122 71.3
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.7e-27 126.7 83 73.5
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.7e-27 126.7 99 64.6
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.2e-27 126.3 151 55.6
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 2.9e-27 125.9 77 75.3
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 3.7e-27 125.6 116 70.7
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 3.7e-27 125.6 96 66.7
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 4.9e-27 125.2 164 56.1
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 6.4e-27 124.8 129 64.3
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 1.1e-26 124.0 116 71.6
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.4e-26 123.6 78 75.6
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 2.4e-26 122.9 135 65.9
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 4.1e-26 122.1 114 69.3
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 4.1e-26 122.1 131 53.4
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 4.1e-26 122.1 141 59.6
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 5.4e-26 121.7 99 63.6
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 7.0e-26 121.3 137 52.6
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 7.0e-26 121.3 81 66.7
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 9.2e-26 120.9 113 61.9
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 9.2e-26 120.9 141 51.1
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 2.7e-25 119.4 113 69.9
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 2.7e-25 119.4 113 69.9
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 2.7e-25 119.4 113 69.9
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 2.7e-25 119.4 113 69.9
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 2.7e-25 119.4 98 75.5
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 7.8e-25 117.9 100 59.0
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 1.7e-24 116.7 86 64.0
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.7e-24 116.7 81 66.7
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 3.0e-24 115.9 93 66.7
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.1e-23 114.0 132 46.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 1.5e-23 113.6 122 65.6
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 3.3e-23 112.5 129 63.6
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.2e-22 110.5 106 54.7
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.1e-22 109.8 116 56.0
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 2.1e-22 109.8 120 54.2
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.8e-22 109.4 106 53.8
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 8.0e-22 107.8 106 57.5
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 1.1e-21 107.5 157 53.5
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.1e-21 107.5 110 62.7
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 6.8e-21 104.8 102 61.8
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 8.9e-21 104.4 72 72.2
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.7e-19 100.1 115 54.8
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.4e-18 96.3 75 64.0
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 4.1e-18 95.5 113 49.6
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 4.6e-17 92.0 95 53.7
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 5.1e-16 88.6 92 58.7
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 7.3e-15 84.7 64 59.4
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.2e-14 81.6 81 69.1
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.2e-14 81.6 81 69.1
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.4e-13 80.5 81 59.3
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.4e-13 80.5 107 48.6
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.8e-13 80.1 72 56.9
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 8.9e-13 77.8 68 58.8
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 8.9e-13 77.8 68 58.8
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.4e-12 75.9 85 50.6
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 2.5e-07 59.7 64 60.9
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 2.5e-07 59.7 102 39.2
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 1.6e-06 57.0 108 42.6


User provided reference genes

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