Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.5e-92 341.7 178 100.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 6.7e-51 204.5 181 64.1
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.1e-50 203.8 182 63.2
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.6e-44 183.3 177 58.2
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.9e-42 176.4 182 57.1
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.5e-42 176.0 182 57.1
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 6.9e-40 167.9 178 54.5
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 2.0e-39 166.4 150 59.3
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 4.5e-39 165.2 150 57.3
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 7.6e-39 164.5 118 66.9
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 1.3e-38 163.7 171 53.8
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.4e-37 160.2 173 52.6
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.9e-37 159.8 157 54.8
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 4.2e-37 158.7 170 52.9
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 4.2e-37 158.7 170 52.9
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 5.5e-37 158.3 161 53.4
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 1.2e-36 157.1 156 55.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.2e-36 157.1 149 57.0
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.6e-36 156.8 136 61.0
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.6e-36 156.8 148 58.1
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 2.7e-36 156.0 158 53.8
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 4.6e-36 155.2 154 53.9
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 6.0e-36 154.8 149 57.0
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.9e-36 154.5 179 50.3
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.0e-35 154.1 174 51.1
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.0e-35 154.1 174 51.1
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.3e-35 153.7 150 56.7
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.8e-35 153.3 157 54.8
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.8e-35 153.3 136 61.8
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 2.3e-35 152.9 171 49.1
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.3e-35 152.9 149 55.0
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 2.3e-35 152.9 141 57.4
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 3.0e-35 152.5 161 54.0
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.9e-35 152.1 166 53.0
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 5.1e-35 151.8 172 50.6
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 6.7e-35 151.4 173 50.9
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 8.7e-35 151.0 149 53.0
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-34 150.2 174 49.4
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.5e-34 150.2 155 53.5
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.5e-34 150.2 136 58.1
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 2.5e-34 149.4 149 56.4
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 2.5e-34 149.4 171 49.7
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 3.3e-34 149.1 174 50.0
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 5.7e-34 148.3 159 51.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 9.7e-34 147.5 174 50.6
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.6e-33 146.7 155 52.3
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 2.8e-33 146.0 154 56.5
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.8e-33 145.2 152 53.9
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 6.3e-33 144.8 147 54.4
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.1e-32 144.1 140 55.7
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 1.1e-32 144.1 172 47.7
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.8e-32 143.3 149 49.0
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 3.1e-32 142.5 139 54.0
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 3.1e-32 142.5 142 53.5
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 5.3e-32 141.7 150 53.3
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.0e-32 141.0 158 51.9
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 9.0e-32 141.0 161 50.3
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 9.0e-32 141.0 161 49.1
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.2e-31 140.6 147 54.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.2e-31 140.6 132 53.0
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 3.4e-31 139.0 197 44.7
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 5.9e-31 138.3 138 52.9
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 5.9e-31 138.3 138 54.3
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 7.6e-31 137.9 182 49.5
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.0e-30 137.5 146 53.4
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.0e-30 137.5 172 46.5
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.9e-30 136.0 159 49.7
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.9e-30 136.0 164 47.6
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 2.9e-30 136.0 164 47.6
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 5.0e-30 135.2 141 53.9
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 6.5e-30 134.8 148 50.0
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 6.5e-30 134.8 148 50.0
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 8.5e-30 134.4 149 51.0
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 1.4e-29 133.7 179 46.9
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.9e-29 133.3 138 50.0
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 3.2e-29 132.5 198 43.4
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 3.2e-29 132.5 159 49.1
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 3.2e-29 132.5 141 50.4
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 5.5e-29 131.7 156 49.4
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 7.2e-29 131.3 129 59.7
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 7.2e-29 131.3 166 47.6
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.3e-29 131.0 173 48.0
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 9.3e-29 131.0 141 48.9
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 9.3e-29 131.0 133 52.6
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.2e-28 130.6 115 54.8
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.2e-28 130.6 126 55.6
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.6e-28 130.2 178 46.6
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.6e-28 130.2 141 50.4
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 2.7e-28 129.4 126 59.5
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.1e-28 128.3 175 45.1
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.3e-27 127.1 170 44.7
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.3e-27 127.1 124 55.6
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.3e-27 127.1 132 53.8
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.3e-27 126.3 147 50.3
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 138 50.0
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 138 50.0
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 138 50.0
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 138 50.0
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 138 50.0
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 3.9e-27 125.6 138 50.0
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 6.7e-27 124.8 125 54.4
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 6.7e-27 124.8 138 50.0
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 1.1e-26 124.0 133 51.9
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 1.5e-26 123.6 144 48.6
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.9e-26 123.2 158 46.8
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.9e-26 123.2 122 54.9
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.9e-26 123.2 122 54.9
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.9e-26 123.2 163 47.2
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.9e-26 123.2 161 46.0
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 2.5e-26 122.9 131 51.9
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 9.7e-26 120.9 151 49.0
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 6.3e-25 118.2 139 47.5
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 6.3e-25 118.2 146 47.9
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 6.3e-25 118.2 105 55.2
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 8.2e-25 117.9 157 46.5
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.1e-24 117.5 138 47.1
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 1.8e-24 116.7 146 46.6
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 1.8e-24 116.7 143 49.7
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.3e-24 115.2 139 48.2
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.2e-23 114.0 155 45.2
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 1.5e-23 113.6 116 55.2
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 3.4e-23 112.5 157 45.2
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 7.7e-23 111.3 155 47.1
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 1.7e-22 110.2 155 43.2
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 2.1e-20 103.2 124 46.0
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 3.6e-20 102.4 112 48.2
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.1e-18 97.4 128 47.7
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 4.4e-18 95.5 99 53.5
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 9.7e-18 94.4 112 49.1
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.9e-13 80.1 150 33.3
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 2.5e-13 79.7 151 35.8
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.2e-13 79.3 99 48.5
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 2.1e-12 76.6 153 37.9
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 3.6e-12 75.9 135 33.3
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.7e-12 75.5 131 39.7
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 8.0e-12 74.7 119 42.9
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 1.0e-11 74.3 129 35.7
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 2.3e-11 73.2 82 48.8
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 1.3e-09 67.4 80 46.2
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 4.1e-08 62.4 60 51.7
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 4.5e-07 58.9 38 68.4
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 8.5e-06 54.7 74 47.3


User provided reference genes

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