Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 7.0e-165 583.9 309 100.0
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 4.8e-105 385.2 270 73.3
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 1.4e-104 383.6 270 73.3
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 3.1e-104 382.5 271 72.3
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 1.4e-101 373.6 274 71.9
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 7.6e-95 351.3 218 80.3
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 1.1e-93 347.4 204 81.4
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 3.2e-93 345.9 191 85.3
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 9.3e-93 344.4 204 80.9
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 9.3e-93 344.4 269 66.9
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 9.3e-93 344.4 264 68.2
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 2.1e-92 343.2 293 64.2
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 2.1e-92 343.2 229 76.4
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 2.7e-92 342.8 197 84.3
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 4.6e-92 342.0 262 68.7
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 6.1e-92 341.7 270 66.7
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 2.3e-91 339.7 225 75.1
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 3.9e-91 339.0 258 67.8
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 3.9e-91 339.0 206 78.2
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 5.1e-91 338.6 231 71.9
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 6.7e-91 338.2 219 74.0
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 1.5e-90 337.0 223 74.4
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 1.9e-90 336.7 231 73.6
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 2.5e-90 336.3 268 67.5
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 3.3e-90 335.9 180 85.6
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 3.3e-90 335.9 228 73.2
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.3e-90 335.5 225 72.4
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.3e-90 335.5 228 72.8
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.3e-90 335.5 225 72.4
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 4.3e-90 335.5 233 70.8
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 7.4e-90 334.7 218 74.3
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 9.7e-90 334.3 234 71.8
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 9.7e-90 334.3 231 72.7
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 2.2e-89 333.2 181 86.2
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 3.7e-89 332.4 266 63.5
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 3.7e-89 332.4 256 69.5
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 6.3e-89 331.6 234 70.9
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.1e-88 330.9 267 64.8
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 1.4e-88 330.5 191 81.2
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 1.4e-88 330.5 191 81.2
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 1.4e-88 330.5 191 81.2
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 4.1e-88 328.9 277 64.3
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 4.1e-88 328.9 221 71.5
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 9.0e-88 327.8 199 78.9
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 1.2e-87 327.4 220 72.7
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 1.2e-87 327.4 253 66.4
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 2.0e-87 326.6 229 71.6
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 2.0e-87 326.6 183 80.9
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 2.0e-87 326.6 233 69.5
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 2.0e-87 326.6 223 73.1
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 2.0e-87 326.6 180 82.8
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.0e-87 326.6 225 71.6
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 2.0e-87 326.6 197 79.2
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 2.6e-87 326.2 184 83.2
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 7.7e-87 324.7 190 79.5
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 7.7e-87 324.7 217 71.4
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 1.7e-86 323.6 197 78.7
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 1.7e-86 323.6 222 73.0
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 2.2e-86 323.2 180 82.2
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 2.9e-86 322.8 259 66.4
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 1.1e-85 320.9 195 79.0
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 1.9e-85 320.1 262 65.3
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 2.5e-85 319.7 180 80.6
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 2.5e-85 319.7 179 83.8
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 3.2e-85 319.3 304 58.6
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 7.2e-85 318.2 273 63.0
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 7.2e-85 318.2 176 83.5
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 7.2e-85 318.2 233 67.4
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 1.6e-84 317.0 207 75.8
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 6.1e-84 315.1 184 79.9
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 6.1e-84 315.1 225 71.6
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 1.0e-83 314.3 263 63.9
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 1.0e-83 314.3 264 65.2
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 1.1e-82 310.8 181 77.9
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 2.0e-82 310.1 226 69.5
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 1.4e-80 303.9 175 82.9
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 9.1e-80 301.2 169 87.0
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 7.7e-79 298.1 270 60.0
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 3.8e-78 295.8 235 64.7
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 4.7e-76 288.9 262 58.4
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 1.0e-75 287.7 245 59.6
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 3.0e-75 286.2 167 78.4
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 1.5e-74 283.9 160 85.6
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 3.1e-72 276.2 255 60.4
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.1e-72 275.8 228 62.7
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 9.1e-72 274.6 165 81.2
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 5.9e-71 271.9 160 81.9
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 2.5e-69 266.5 170 72.4
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 2.3e-67 260.0 160 76.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 5.2e-67 258.8 183 71.0
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 2.0e-63 246.9 148 78.4
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 6.8e-59 231.9 188 56.9
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 2.0e-58 230.3 164 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 2.8e-57 226.5 187 54.5
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 8.3e-57 224.9 188 55.3
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 3.1e-56 223.0 185 54.6
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 5.4e-56 222.2 159 68.6
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 5.9e-55 218.8 263 51.0
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 8.0e-52 208.4 185 57.8
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 2.6e-50 203.4 117 82.9
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 9.8e-50 201.4 182 50.5
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 2.4e-48 196.8 197 53.3
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 1.5e-45 187.6 131 70.2
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 1.6e-44 184.1 165 58.2
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 4.9e-41 172.6 246 40.2
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 1.1e-40 171.4 221 45.2
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 9.2e-40 168.3 102 78.4
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 5.9e-39 165.6 116 71.6
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.3e-38 163.7 228 43.9
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 4.3e-37 159.5 236 40.7
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 2.1e-36 157.1 97 76.3
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 7.5e-34 148.7 176 43.2
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 4.6e-23 112.8 60 81.7
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 1.7e-09 67.8 45 73.3
CSS0026826 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 7.8e-07 58.9 50 56.0
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 1.3e-06 58.2 62 40.3


User provided reference genes

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