Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 3.0e-238 828.2 433 100.0
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 4.0e-227 791.2 412 100.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 3.7e-196 688.3 479 79.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.3e-172 610.1 479 70.8
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 2.9e-169 599.0 482 69.1
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.8e-167 592.4 479 69.5
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.3e-166 589.3 479 69.1
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.1e-166 589.0 479 68.9
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 1.7e-164 583.2 479 68.7
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 4.0e-150 535.4 486 61.9
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 9.9e-149 530.8 481 61.7
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 6.6e-145 518.1 479 63.0
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.4e-142 510.4 481 59.7
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 3.1e-142 509.2 479 59.9
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 4.0e-142 508.8 481 58.8
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 4.9e-140 501.9 481 59.7
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 3.2e-139 499.2 481 57.8
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 2.7e-138 496.1 477 59.5
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.7e-137 493.4 482 57.7
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 3.0e-137 492.7 481 57.4
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 3.0e-137 492.7 481 57.8
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.1e-136 490.7 480 59.8
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.1e-136 490.7 482 58.3
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 9.6e-136 487.6 481 57.8
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 1.1e-134 484.2 482 57.1
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.1e-134 484.2 476 58.0
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.4e-134 483.0 482 56.8
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 2.4e-134 483.0 481 57.4
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.2e-133 480.7 481 57.2
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 7.6e-133 478.0 474 58.9
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 9.9e-133 477.6 479 56.6
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.7e-132 476.9 482 55.8
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 3.8e-132 475.7 475 58.5
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 4.9e-132 475.3 472 58.9
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.4e-131 473.8 470 57.2
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.4e-131 473.0 482 55.0
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 3.2e-131 472.6 483 57.1
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 4.2e-131 472.2 483 56.5
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 4.2e-131 472.2 481 55.9
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 7.1e-131 471.5 474 58.4
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 9.3e-131 471.1 482 57.3
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.6e-130 470.3 475 58.9
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 2.1e-130 469.9 482 57.1
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.7e-130 469.5 475 55.2
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 4.6e-130 468.8 479 55.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 7.8e-130 468.0 483 56.1
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.0e-129 467.6 473 55.0
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.7e-129 466.8 480 54.6
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.3e-129 466.5 479 55.1
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 3.9e-129 465.7 476 55.7
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 3.9e-129 465.7 477 55.8
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 3.9e-129 465.7 482 56.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 5.1e-129 465.3 482 56.4
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 6.6e-129 464.9 470 56.0
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 6.6e-129 464.9 482 55.8
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.1e-128 464.2 477 54.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.1e-128 464.2 484 57.2
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 4.3e-128 462.2 477 56.0
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 4.3e-128 462.2 483 54.9
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 9.6e-128 461.1 482 54.1
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.6e-127 460.3 471 55.6
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 1.4e-126 457.2 479 53.4
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 1.4e-126 457.2 467 55.2
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 1.4e-126 457.2 467 55.2
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 3.1e-126 456.1 467 55.2
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.0e-125 453.4 473 56.7
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.0e-125 453.4 477 55.6
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 6.4e-124 448.4 479 53.2
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 6.0e-122 441.8 476 54.0
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.3e-121 440.7 473 54.3
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.3e-121 439.9 473 52.0
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.5e-120 437.2 481 52.4
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.3e-120 436.0 480 51.5
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 3.7e-119 432.6 476 51.3
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 6.2e-119 431.8 482 52.9
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 1.4e-118 430.6 472 53.2
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.8e-118 430.3 480 51.7
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.8e-118 430.3 481 52.6
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 3.1e-118 429.5 484 52.7
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 4.0e-118 429.1 482 52.5
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 5.3e-118 428.7 472 53.2
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.0e-117 426.8 482 53.1
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.4e-117 426.0 495 50.1
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 7.6e-117 424.9 478 52.3
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 7.6e-117 424.9 483 53.0
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.0e-116 424.5 474 51.7
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.7e-116 423.7 483 52.8
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 2.9e-116 422.9 480 51.0
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.1e-115 421.0 476 52.5
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.1e-115 421.0 477 50.7
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 3.5e-114 416.0 486 51.4
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 9.0e-110 401.4 481 49.1
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.7e-108 397.1 492 47.8
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.2e-107 392.9 483 48.4
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 5.7e-104 382.1 476 48.7
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.5e-99 366.7 481 47.2
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 5.5e-99 365.5 357 55.7
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 3.9e-97 359.4 478 46.0
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 4.8e-95 352.4 511 44.8
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 3.0e-89 333.2 242 71.1
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 2.0e-88 330.5 242 69.4
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 5.2e-81 305.8 491 40.3
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 5.9e-77 292.4 481 39.3
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-76 291.2 488 39.1
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 9.4e-75 285.0 197 74.6
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.7e-74 283.5 499 37.1
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.8e-73 280.8 277 62.8
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.0e-65 255.0 181 70.2
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.4e-65 254.6 245 57.1
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.6e-61 241.1 472 36.7
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 4.6e-53 213.0 163 66.9
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 4.6e-53 213.0 163 66.9
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 3.9e-52 209.9 352 37.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 5.6e-51 206.1 315 37.5
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 1.7e-47 194.5 213 51.6
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.9e-46 191.0 325 41.2
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.2e-46 190.3 163 58.9
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 1.6e-45 188.0 336 36.0
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 7.3e-43 179.1 268 42.9
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 5.8e-40 169.5 267 42.7
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.0e-33 146.7 315 37.1
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 8.9e-33 145.6 273 38.1
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.9e-32 142.1 164 46.3
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.1e-30 138.7 211 44.5
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 9.9e-24 115.5 75 82.7
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.2e-16 92.0 93 59.1
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.4e-14 83.2 48 81.2
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-12 78.6 212 31.6
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 8.4e-07 59.3 37 78.4


User provided reference genes

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