Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 3.7e-49 198.0 107 100.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 2.9e-25 118.6 75 85.3
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-24 116.7 75 82.7
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-24 116.7 75 82.7
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 2.1e-23 112.5 75 77.3
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.6e-23 111.3 75 77.3
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.6e-23 111.3 67 82.1
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.6e-23 111.3 75 77.3
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.3e-22 109.0 75 76.0
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.5e-21 106.3 75 77.3
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 1.6e-20 102.8 75 74.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.2e-18 96.7 68 75.0
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 8.4e-17 90.5 68 70.6
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.9e-16 89.4 76 65.8
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 3.2e-16 88.6 76 63.2
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 3.2e-16 88.6 68 70.6
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 7.1e-16 87.4 76 64.5
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 7.1e-16 87.4 68 67.6
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 9.3e-16 87.0 68 66.2
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 9.3e-16 87.0 68 66.2
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 9.3e-16 87.0 76 65.8
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 9.3e-16 87.0 68 67.6
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 9.3e-16 87.0 75 62.7
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.2e-15 86.7 68 64.7
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.2e-15 86.7 68 66.2
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.6e-15 86.3 68 66.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 2.1e-15 85.9 68 64.7
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 2.1e-15 85.9 68 64.7
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-15 85.9 76 67.1
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-15 85.9 76 67.1
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 6.0e-15 84.3 68 69.1
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 6.0e-15 84.3 68 66.2
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.0e-14 83.6 68 66.2
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.3e-14 83.2 68 61.8
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.3e-14 83.2 76 60.5
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 1.3e-14 83.2 68 64.7
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 2.3e-14 82.4 68 63.2
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.3e-14 82.4 75 62.7
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 5.1e-14 81.3 68 63.2
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 5.1e-14 81.3 68 63.2
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 5.1e-14 81.3 68 66.2
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 6.7e-14 80.9 68 63.2
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 6.7e-14 80.9 68 63.2
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 8.7e-14 80.5 68 61.8
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 8.7e-14 80.5 67 64.2
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 8.7e-14 80.5 67 64.2
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 8.7e-14 80.5 76 64.5
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.1e-13 80.1 68 64.7
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.1e-13 80.1 68 60.3
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.1e-13 80.1 68 63.2
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.1e-13 80.1 68 64.7
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 1.5e-13 79.7 68 63.2
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.5e-13 79.7 67 64.2
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.5e-13 79.7 74 60.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 1.5e-13 79.7 67 62.7
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.9e-13 79.3 69 59.4
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.9e-13 79.3 68 66.2
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 2.5e-13 79.0 68 60.3
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 3.3e-13 78.6 68 60.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 3.3e-13 78.6 68 64.7
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 5.6e-13 77.8 68 60.3
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 5.6e-13 77.8 76 61.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.3e-12 76.6 68 64.7
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.6e-12 76.3 67 61.2
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 1.6e-12 76.3 68 64.7
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.8e-12 75.5 68 64.7
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.8e-12 75.5 76 59.2
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 3.7e-12 75.1 68 64.7
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 4.8e-12 74.7 68 57.4
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 4.8e-12 74.7 76 59.2
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 4.8e-12 74.7 69 59.4
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 1.1e-11 73.6 68 61.8
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 2.4e-11 72.4 69 56.5
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 3.1e-11 72.0 67 55.2
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 4.0e-11 71.6 68 58.8
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 4.0e-11 71.6 67 58.2
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 5.3e-11 71.2 68 60.3
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 9.0e-11 70.5 68 58.8
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.2e-10 70.1 76 55.3
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.5e-10 69.7 70 55.7
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.5e-10 69.7 68 63.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.5e-10 68.2 67 50.7
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 4.5e-10 68.2 70 54.3
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 5.8e-10 67.8 60 60.0
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 5.8e-10 67.8 67 49.3
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 7.6e-10 67.4 76 52.6
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 7.6e-10 67.4 68 57.4
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.0e-09 67.0 70 54.3
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.3e-09 66.6 67 58.2
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.3e-09 66.6 76 52.6
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.7e-09 66.2 75 53.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.7e-09 66.2 75 53.3
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.7e-09 66.2 70 55.7
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.2e-09 65.9 40 80.0
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.2e-09 65.9 69 56.5
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 2.2e-09 65.9 67 53.7
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.9e-09 64.7 68 54.4
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 6.5e-09 64.3 68 57.4
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 6.5e-09 64.3 68 55.9
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 6.5e-09 64.3 69 55.1
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 1.1e-08 63.5 67 50.7
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.1e-08 63.5 67 55.2
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.2e-07 60.1 76 51.3
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.7e-07 58.9 68 48.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.7e-07 58.9 73 45.2
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 6.0e-07 57.8 37 78.4
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-06 56.6 69 46.4
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.8e-06 56.2 67 43.3
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.8e-06 56.2 67 46.3
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.8e-06 56.2 67 46.3
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 3.0e-06 55.5 67 50.7


User provided reference genes

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