Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 4.6e-250 867.5 445 100.0
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 4.2e-211 738.0 440 84.5
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.3e-188 663.3 439 77.0
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 1.2e-186 656.8 438 76.0
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.1e-186 656.0 430 77.4
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 2.6e-184 649.0 440 73.4
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.3e-183 646.7 420 76.0
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 4.1e-182 641.7 423 74.9
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 4.5e-181 638.3 437 72.5
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.0e-180 637.1 430 74.4
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 1.7e-180 636.3 445 72.4
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 5.5e-179 631.3 423 74.0
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 4.7e-178 628.2 415 75.4
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 4.7e-178 628.2 426 73.9
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 4.7e-178 628.2 441 72.3
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 1.0e-177 627.1 439 72.2
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 8.8e-177 624.0 426 73.0
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 2.0e-176 622.9 435 72.0
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.6e-176 622.5 433 72.5
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 5.7e-176 621.3 436 71.3
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 5.7e-176 621.3 434 72.4
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 7.4e-176 620.9 429 73.2
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 2.2e-175 619.4 445 71.2
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.1e-174 617.1 409 73.8
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 1.4e-174 616.7 435 72.6
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 5.3e-174 614.8 445 70.3
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 7.0e-174 614.4 414 73.9
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 9.1e-174 614.0 444 70.0
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.6e-173 613.2 435 71.7
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 2.0e-173 612.8 441 70.1
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 7.7e-173 610.9 428 71.7
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 3.8e-172 608.6 429 71.1
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 8.5e-172 607.4 441 71.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 1.1e-171 607.1 432 71.5
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 1.9e-171 606.3 424 71.9
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 2.5e-171 605.9 437 70.0
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 4.2e-171 605.1 431 71.5
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 1.6e-170 603.2 430 70.5
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 2.1e-170 602.8 448 69.0
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.1e-170 602.8 439 69.9
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 2.7e-170 602.4 430 70.7
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.6e-170 602.1 436 70.0
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.0e-169 600.5 421 72.0
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.8e-169 599.7 442 69.5
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 2.3e-169 599.4 419 70.6
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 2.3e-169 599.4 441 68.9
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 3.0e-169 599.0 454 67.0
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 8.8e-169 597.4 403 74.2
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 8.8e-169 597.4 440 68.6
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 8.8e-169 597.4 444 67.8
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 1.5e-168 596.7 442 70.1
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-168 596.3 436 69.3
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 2.6e-168 595.9 440 68.6
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 3.3e-168 595.5 411 72.0
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 9.7e-168 594.0 433 69.5
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 9.7e-168 594.0 440 68.4
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 4.1e-166 588.6 437 67.7
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 5.3e-166 588.2 425 70.4
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 5.3e-166 588.2 430 69.5
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 5.3e-166 588.2 429 69.5
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 7.0e-166 587.8 442 69.0
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 4.5e-165 585.1 378 77.8
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 5.9e-165 584.7 430 70.2
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 5.0e-164 581.6 412 70.9
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 3.2e-163 578.9 387 72.4
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 9.4e-163 577.4 437 68.4
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 9.4e-163 577.4 505 61.8
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 1.2e-162 577.0 430 68.1
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.2e-162 577.0 417 70.5
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 1.6e-162 576.6 444 67.3
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 1.0e-161 573.9 438 66.7
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.4e-161 573.5 541 58.6
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 6.8e-161 571.2 438 66.7
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 2.2e-159 566.2 420 68.3
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 6.3e-159 564.7 421 67.9
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 2.9e-156 555.8 438 65.8
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 3.8e-156 555.4 449 64.4
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 5.0e-156 555.1 435 63.9
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 6.6e-156 554.7 442 65.2
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 1.9e-155 553.1 416 67.3
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 1.9e-155 553.1 416 67.3
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.3e-153 546.2 417 67.4
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 3.0e-153 545.8 437 62.2
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 1.2e-152 543.9 406 67.0
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 7.5e-152 541.2 404 67.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 1.4e-150 537.0 428 65.2
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.6e-149 533.5 390 70.5
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 3.3e-147 525.8 385 65.7
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 3.3e-147 525.8 333 80.5
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 2.8e-146 522.7 398 67.1
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 4.9e-143 511.9 343 75.8
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.0e-141 506.5 374 71.4
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 5.2e-137 491.9 405 61.5
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 8.9e-137 491.1 401 61.8
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 2.1e-130 469.9 419 58.7
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.1e-129 467.6 417 57.3
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 1.2e-122 444.1 394 57.6
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 5.2e-121 438.7 335 66.3
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 8.7e-116 421.4 431 55.2
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 4.0e-113 412.5 219 91.3
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 1.2e-112 411.0 320 67.5
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.5e-112 410.6 393 56.0
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 7.1e-110 401.7 304 63.5
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 1.0e-108 397.9 229 90.4
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 2.8e-106 389.8 323 65.6
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.4e-104 382.9 352 61.9
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 6.4e-103 378.6 252 75.8
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.3e-92 344.4 393 48.9
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.2e-90 335.1 223 78.9
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 2.0e-75 287.3 408 44.1
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.5e-64 251.1 421 39.0
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-53 214.5 149 71.8
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.0e-48 197.6 120 78.3
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.2e-46 189.1 133 72.2
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.8e-44 184.5 133 70.7
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.3e-44 184.1 133 70.7
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.0e-44 183.3 112 77.7
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.8e-35 152.1 104 76.0
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 1.4e-33 148.3 105 68.6
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 2.3e-31 141.0 100 68.0
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 5.0e-31 139.8 100 67.0
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.2e-29 135.2 92 70.7
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.7e-24 117.5 69 78.3
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.9e-22 111.3 80 62.5
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 4.3e-22 110.2 69 75.4
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 2.6e-19 100.9 66 63.6
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 7.5e-19 99.4 129 48.1
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 2.4e-17 94.4 49 83.7
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 5.4e-17 93.2 131 46.6
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 8.6e-15 85.9 222 36.9
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 2.1e-13 81.3 41 82.9
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 2.8e-13 80.9 51 76.5
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 3.4e-11 73.9 41 78.0


User provided reference genes

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