Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 8.4e-238 826.6 417 100.0
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 5.1e-195 684.5 418 84.0
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 5.0e-182 641.3 419 77.8
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.5e-157 560.1 419 69.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.3e-157 557.8 419 69.0
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 9.5e-157 557.4 419 69.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.8e-155 551.2 419 68.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.8e-152 543.1 419 67.1
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.8e-152 543.1 419 67.5
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 9.8e-138 494.2 423 61.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 5.1e-134 481.9 423 60.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 3.6e-132 475.7 420 59.8
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 6.2e-132 474.9 423 61.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.3e-131 473.0 422 58.8
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.5e-125 453.0 433 56.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.3e-125 452.6 421 58.2
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 8.1e-124 448.0 417 58.5
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.4e-123 447.2 437 56.1
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 5.2e-123 445.3 437 58.1
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 6.6e-118 428.3 424 54.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.3e-116 424.1 442 55.9
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.2e-114 417.5 424 53.8
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 7.6e-114 414.8 421 54.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 9.3e-112 407.9 425 53.2
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.1e-111 406.8 423 53.2
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.0e-110 404.4 423 51.8
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 5.6e-109 398.7 421 52.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 5.3e-107 392.1 420 51.4
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.6e-106 389.8 398 54.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.4e-106 389.4 430 50.7
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 4.9e-105 385.6 423 50.8
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 7.1e-104 381.7 356 58.1
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 9.3e-104 381.3 425 51.8
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 9.3e-104 381.3 431 49.4
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.3e-102 376.7 422 50.0
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.7e-102 374.8 425 48.5
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.1e-101 374.4 422 49.1
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.3e-101 372.9 422 49.1
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 9.6e-101 371.3 425 48.5
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-100 370.9 425 48.5
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.3e-100 370.9 425 50.4
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.1e-99 367.9 425 52.0
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.8e-99 367.1 426 51.6
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.6e-98 363.2 433 47.8
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.5e-98 362.5 424 48.8
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.2e-97 360.1 424 48.6
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 3.8e-97 359.4 426 50.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-96 357.1 334 56.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.5e-96 355.5 450 45.8
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.1e-95 353.6 438 46.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 2.7e-95 353.2 430 47.7
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.6e-95 352.4 431 49.9
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 6.0e-95 352.1 435 48.5
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.0e-94 351.3 422 48.1
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.8e-94 350.5 423 48.5
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 6.7e-94 348.6 425 50.8
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.7e-94 348.6 396 47.7
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.9e-93 347.1 398 49.7
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.9e-93 347.1 431 48.7
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.7e-93 344.7 423 48.0
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 9.7e-93 344.7 417 48.0
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-92 344.4 327 56.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.8e-92 343.2 438 45.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.7e-92 342.8 423 46.8
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 6.3e-92 342.0 424 49.1
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 9.0e-91 338.2 421 46.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 4.5e-90 335.9 422 48.3
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 4.5e-90 335.9 422 48.1
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.4e-88 330.9 430 43.7
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-88 330.5 427 46.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-88 330.5 427 46.6
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-87 327.8 429 47.6
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 3.6e-87 326.2 435 43.7
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.0e-86 323.2 439 44.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.7e-86 321.6 321 53.9
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.1e-85 321.2 441 44.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.5e-85 320.9 439 43.5
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.5e-85 320.9 477 42.8
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 4.3e-85 319.3 443 45.4
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 5.7e-85 318.9 425 45.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 7.4e-85 318.5 419 45.1
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 7.4e-85 318.5 425 45.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 8.2e-84 315.1 354 49.7
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.1e-83 314.7 433 42.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.4e-83 314.3 433 45.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 4.1e-83 312.8 435 43.0
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 5.3e-83 312.4 423 43.7
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.2e-82 311.2 425 45.2
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.6e-82 310.1 435 42.8
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 5.9e-82 308.9 435 42.1
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.2e-81 307.0 451 43.0
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.2e-79 301.2 426 41.5
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 6.1e-79 298.9 423 41.4
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-77 294.7 423 43.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.4e-77 292.7 426 41.8
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-76 291.2 425 41.2
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.7e-76 289.7 425 40.9
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.7e-76 289.7 446 42.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.8e-75 287.3 436 42.9
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 9.1e-75 285.0 424 40.8
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 7.7e-74 282.0 426 41.3
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.3e-73 281.2 420 38.8
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 5.0e-73 279.3 424 40.1
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.9e-72 277.3 426 41.3
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.6e-71 273.1 421 40.4
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 6.1e-71 272.3 446 40.6
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 7.9e-71 271.9 425 40.2
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.4e-70 271.2 435 41.6
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 6.7e-70 268.9 427 40.0
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 8.2e-68 261.9 419 40.6
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.6e-66 257.7 287 51.2
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.7e-66 255.4 287 50.5
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-65 254.6 426 38.5
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 5.0e-65 252.7 438 39.5
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.2e-64 250.0 426 38.5
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.2e-64 250.0 431 38.3
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 3.2e-64 250.0 338 46.2
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 4.2e-64 249.6 261 52.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.3e-62 243.8 416 38.9
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.4e-59 233.8 420 39.5
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.1e-56 224.9 299 45.5
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.2e-56 223.0 381 37.3
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.7e-55 220.3 178 64.0
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 3.6e-55 219.9 410 37.6
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 6.1e-55 219.2 419 38.2
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.3e-54 217.2 360 36.4
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.1e-51 208.4 352 38.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 7.2e-48 195.7 438 32.9
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.2e-47 194.9 371 35.3
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 5.4e-43 179.5 417 30.9
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-37 161.4 170 51.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.6e-37 160.6 227 44.9
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-32 144.4 173 45.1
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 9.5e-32 142.1 287 35.5
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 9.8e-29 132.1 428 28.7
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.3e-28 131.7 154 47.4
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 3.7e-28 130.2 155 49.0
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-27 128.6 155 48.4
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-27 128.6 155 48.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-27 127.9 145 48.3
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.0e-25 119.8 128 56.2
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 9.9e-21 105.5 85 65.9
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 3.0e-17 94.0 145 37.2
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 4.3e-16 90.1 389 24.7
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.1e-15 87.8 115 45.2
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 3.4e-13 80.5 267 28.1
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 9.9e-13 79.0 65 64.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.7e-10 70.9 62 50.0
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.5e-10 70.5 79 45.6
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 4.6e-10 70.1 69 49.3
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 4.6e-10 70.1 69 49.3
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.9e-09 67.0 129 34.1
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.1e-09 66.6 54 53.7
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-08 65.5 79 50.6
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-08 65.5 67 49.3
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-08 65.5 67 49.3
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.1e-08 65.5 67 49.3
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.1e-08 65.5 83 38.6
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 4.3e-08 63.5 111 34.2
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 8.1e-07 59.3 84 42.9
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.4e-06 58.5 55 54.5
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.4e-06 58.5 55 54.5
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.8e-06 58.2 50 50.0


User provided reference genes

Program Settings