Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1290300 Malus domestica HOM05D019654 ORTHO05D010368 2.3e-128 462.2 232 100.0
Prupe.7G246000 Prunus persica HOM05D019654 ORTHO05D010368 2.5e-74 282.7 230 65.7
Prupe.8G245300 Prunus persica HOM05D019654 ORTHO05D010368 4.4e-71 271.9 230 63.5
CsaV3_7G028570 Cucumis sativus L. HOM05D029525 ORTHO05D010368 2.2e-17 93.6 248 30.6
Gorai.002G011100 Gossypium raimondii HOM05D014780 ORTHO05D010368 2.2e-17 93.6 241 33.6
Haze_05094 Corylus avellana HOM05D010143 ORTHO05D010368 3.7e-17 92.8 230 33.0
Sed0006744 Sechium edule HOM05D029525 ORTHO05D010368 3.7e-17 92.8 239 31.8
FAN24G3097 Fragaria x ananassa HOM05D019654 ORTHO05D045902 6.3e-17 92.0 241 32.8
Gohir.A01G009460 Gossypium hirsutum HOM05D014780 ORTHO05D010368 6.3e-17 92.0 242 33.5
Ca_21110_v3 Cicer arietinum L. HOM05D010143 ORTHO05D010368 8.2e-17 91.7 249 32.1
FvH4_2g23991 Fragaria vesca HOM05D019654 ORTHO05D045902 1.4e-16 90.9 240 32.5
arahy.Tifrunner.gnm1.ann1.2MT6LL Arachis hypogaea HOM05D014780 ORTHO05D010368 6.9e-16 88.6 234 31.6
Gohir.D01G009050 Gossypium hirsutum HOM05D014780 ORTHO05D010368 9.1e-16 88.2 237 33.3
Ciclev10033911m.g Citrus clementina HOM05D014780 ORTHO05D010368 3.4e-15 86.3 263 31.6
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 1.4e-13 80.9 225 30.7
arahy.Tifrunner.gnm1.ann1.1699GZ Arachis hypogaea HOM05D000520 ORTHO05D010368 1.9e-13 80.5 235 29.8
ClCG09G006850 Citrullus lanatus HOM05D029525 ORTHO05D010368 5.5e-13 79.0 232 29.7
Potri.001G326100 Populus trichocarpa HOM05D014780 ORTHO05D010368 5.5e-13 79.0 266 28.9
Thecc.03G139400 Theobroma cacao HOM05D014780 ORTHO05D010368 5.5e-13 79.0 276 33.7
TPR.G39231 Trifolium pratense HOM05D010143 ORTHO05D010368 4.7e-12 75.9 237 31.6
Lj4g0007031 Lotus japonicus HOM05D010143 ORTHO05D010368 3.0e-11 73.2 237 28.3
Cfa004858 Carpinus fangiana HOM05D012249 ORTHO05D010368 1.1e-10 71.2 229 30.1
Sabra09G0097300 Salix brachista HOM05D000057 ORTHO05D010368 2.0e-10 70.5 270 27.8
Atru.chr5.1357 Acer truncatum HOM05D000520 ORTHO05D010368 9.7e-10 68.2 68 44.1
Psat4g008840 Pisum sativum HOM05D010143 ORTHO05D010368 9.7e-10 68.2 228 29.8
Potri.009G126600 Populus trichocarpa HOM05D014780 ORTHO05D010368 9.7e-10 68.2 71 43.7
Gohir.A11G120300 Gossypium hirsutum HOM05D016083 ORTHO05D010368 1.7e-09 67.4 239 28.9
Gohir.D12G005750 Gossypium hirsutum HOM05D016083 ORTHO05D010368 1.7e-09 67.4 159 33.3
Gorai.008G005700 Gossypium raimondii HOM05D016083 ORTHO05D010368 1.7e-09 67.4 159 33.3
Potri.004G144200 Populus trichocarpa HOM05D010143 ORTHO05D010368 1.7e-09 67.4 120 33.3
QL12p022735 Quercus lobata HOM05D010143 ORTHO05D010368 3.7e-09 66.2 64 43.8
Gorai.007G134300 Gossypium raimondii HOM05D016083 ORTHO05D010368 1.4e-08 64.3 231 28.6
Gohir.A12G006300 Gossypium hirsutum HOM05D016083 ORTHO05D010368 1.8e-08 63.9 144 33.3
THA.LOC104823057 Tarenaya hassleriana HOM05D010143 ORTHO05D010368 7.0e-08 62.0 199 26.1
Ciclev10000747m.g Citrus clementina HOM05D000520 ORTHO05D000399 1.2e-07 61.2 65 46.2
PSO407G0131 Papaver somniferum HOM05D000520 ORTHO05D000399 1.2e-07 61.2 75 41.3
MSTRG.20431 Avicennia marina HOM05D000520 ORTHO05D000399 1.5e-07 60.8 76 39.5
Manes.03G184400 Manihot esculenta HOM05D000520 ORTHO05D000399 2.0e-07 60.5 76 43.4
SalBow8G2105 Salvia bowleyana HOM05D000520 ORTHO05D000399 2.0e-07 60.5 76 42.1
Thecc.04G222100 Theobroma cacao HOM05D000520 ORTHO05D000399 2.0e-07 60.5 76 42.1
Actinidia23478 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.6e-07 60.1 85 40.0
CANSAT54G1951 Cannabis sativa HOM05D000520 ORTHO05D000399 3.4e-07 59.7 61 45.9
Haze_04751 Corylus avellana HOM05D027832 ORTHO05D010368 3.4e-07 59.7 82 40.2
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 3.4e-07 59.7 85 38.8
Cpa.g.sc48.23 Carica papaya HOM05D000520 ORTHO05D000399 4.5e-07 59.3 66 43.9
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 4.5e-07 59.3 59 47.5
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 4.5e-07 59.3 59 47.5
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 4.5e-07 59.3 76 42.1
Cfa006554 Carpinus fangiana HOM05D000520 ORTHO05D000399 5.9e-07 58.9 59 47.5
Duzib138G0353 Durio zibethinus HOM05D016083 ORTHO05D010368 5.9e-07 58.9 196 28.6
Medtr1g082650 Medicago truncatula HOM05D000520 ORTHO05D000399 5.9e-07 58.9 59 45.8
EL10Ac4g09331 Beta vulgaris HOM05D000520 ORTHO05D000399 7.7e-07 58.5 85 37.6
CSS0048661 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 7.7e-07 58.5 90 37.8
Ca_10099_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 7.7e-07 58.5 59 45.8
Lj1g0011037 Lotus japonicus HOM05D000520 ORTHO05D000399 7.7e-07 58.5 95 38.9
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 7.7e-07 58.5 76 39.5
Peaxi162Scf00037g00123 Petunia axillaris HOM05D000520 ORTHO05D000399 7.7e-07 58.5 64 42.2
Pp3c18_14890 Physcomitrium patens HOM05D000262 ORTHO05D316388 7.7e-07 58.5 59 40.7
TPR.G22796 Trifolium pratense HOM05D000520 ORTHO05D000399 7.7e-07 58.5 61 44.3
ECA234G3541 Erigeron canadensis HOM05D000520 ORTHO05D000399 1.0e-06 58.2 78 39.7
Manes.15G023400 Manihot esculenta HOM05D000520 ORTHO05D000399 1.0e-06 58.2 76 42.1
Solyc06g084340.1 Solanum lycopersicum HOM05D015379 ORTHO05D017769 1.0e-06 58.2 123 31.7
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 1.0e-06 58.2 73 38.4
arahy.Tifrunner.gnm1.ann1.4A91W2 Arachis hypogaea HOM05D000520 ORTHO05D000399 1.3e-06 57.8 56 50.0
arahy.Tifrunner.gnm1.ann1.BTHT4S Arachis hypogaea HOM05D000520 ORTHO05D000399 1.3e-06 57.8 56 50.0
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 1.3e-06 57.8 59 47.5
Lj5g0006582 Lotus japonicus HOM05D000520 ORTHO05D000399 1.3e-06 57.8 55 47.3
Psat0s1377g0160 Pisum sativum HOM05D000520 ORTHO05D000399 1.3e-06 57.8 59 44.1
GSVIVG01032941001 Vitis vinifera HOM05D000520 ORTHO05D011236 1.3e-06 57.8 112 33.9
Pp3c21_15220 Physcomitrium patens HOM05D000262 ORTHO05D316196 1.7e-06 57.4 59 40.7
Actinidia35576 Actinidia chinensis HOM05D000262 ORTHO05D000300 2.2e-06 57.0 61 45.9
Actinidia40190 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.2e-06 57.0 77 41.6
Glyma.20G232200 Glycine max HOM05D000520 ORTHO05D000399 2.2e-06 57.0 59 44.1
TPR.G20123 Trifolium pratense HOM05D000520 ORTHO05D000399 2.2e-06 57.0 59 45.8
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 2.2e-06 57.0 89 37.1
Atru.chr13.1890 Acer truncatum HOM05D000520 ORTHO05D000399 2.9e-06 56.6 55 47.3
AL3G15190 Arabidopsis lyrata HOM05D010143 ORTHO05D010368 2.9e-06 56.6 64 37.5
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 2.9e-06 56.6 59 44.1
CARHR079170 Cardamine hirsuta HOM05D010143 ORTHO05D010368 2.9e-06 56.6 64 37.5
Glyma.10G156100 Glycine max HOM05D000520 ORTHO05D000399 2.9e-06 56.6 59 44.1
Sabra04G0095800 Salix brachista HOM05D010143 ORTHO05D010368 2.9e-06 56.6 89 32.6
Migut.B01060 Erythranthe guttata HOM05D000520 ORTHO05D000399 3.8e-06 56.2 81 39.5
Eucgr.B01142 Eucalyptus grandis HOM05D000520 ORTHO05D000399 3.8e-06 56.2 69 42.0
Phvul.007G181500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 3.8e-06 56.2 59 44.1
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 3.8e-06 56.2 58 46.6
VMungo0720G0233 Vigna mungo HOM05D000520 ORTHO05D000399 3.8e-06 56.2 59 44.1
Atru.chr4.2566 Acer truncatum HOM05D000520 ORTHO05D000399 5.0e-06 55.8 59 44.1
Atru.chr6.1928 Acer truncatum HOM05D000262 ORTHO05D000300 5.0e-06 55.8 74 40.5
DCAR_002413 Daucus carota HOM05D000520 ORTHO05D000399 5.0e-06 55.8 71 38.0
HanXRQChr10g0310421 Helianthus annuus HOM05D000520 ORTHO05D000399 5.0e-06 55.8 61 42.6
Lalb_Chr13g0304121 Lupinus albus HOM05D000520 ORTHO05D000399 5.0e-06 55.8 61 42.6
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 5.0e-06 55.8 84 38.1
Sabra08G0158700 Salix brachista HOM05D000520 ORTHO05D000399 5.0e-06 55.8 59 45.8
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 5.0e-06 55.8 59 45.8
Haze_04748 Corylus avellana HOM05D027832 ORTHO05D010368 6.5e-06 55.5 64 42.2
Dinv40265 Davidia involucrata HOM05D000520 ORTHO05D000399 6.5e-06 55.5 61 44.3
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 6.5e-06 55.5 108 33.3
Thhalv10001101m.g Eutrema salsugineum HOM05D010143 ORTHO05D010368 6.5e-06 55.5 64 35.9
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 6.5e-06 55.5 59 42.4
MBI19_g02905_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 6.5e-06 55.5 59 44.1
Oeu001437.1 Olea europaea HOM05D012249 ORTHO05D014194 6.5e-06 55.5 103 30.1
Oeu042784.1 Olea europaea HOM05D000520 ORTHO05D000399 6.5e-06 55.5 80 38.8
Peaxi162Scf00783g00342 Petunia axillaris HOM05D015379 ORTHO05D017769 6.5e-06 55.5 71 35.2
Potri.008G202800 Populus trichocarpa HOM05D000520 ORTHO05D000399 6.5e-06 55.5 59 45.8
Rhsim13G0022300 Rhododendron simsii HOM05D000563 ORTHO05D000536 6.5e-06 55.5 57 45.6
Hund07053 Selenicereus undatus HOM05D000520 ORTHO05D000399 6.5e-06 55.5 75 42.7
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 6.5e-06 55.5 103 35.0
unitig_62.g23731 Utricularia gibba HOM05D000520 ORTHO05D006660 6.5e-06 55.5 61 44.3
Ah.04g159770 Amaranthus hybridus HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 44.1
Aqoxy5G00529 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 8.5e-06 55.1 73 41.1
arahy.Tifrunner.gnm1.ann1.J3K1ST Arachis hypogaea HOM05D000520 ORTHO05D000399 8.5e-06 55.1 65 44.6
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 45.8
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 8.5e-06 55.1 76 38.2
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 8.5e-06 55.1 92 34.8
Medtr2g022240 Medicago truncatula HOM05D000520 ORTHO05D000399 8.5e-06 55.1 55 50.9
Medtr4g117140 Medicago truncatula HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 45.8
Medtr4g117220 Medicago truncatula HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 45.8
Oeu022024.1 Olea europaea HOM05D000262 ORTHO05D005718 8.5e-06 55.1 67 40.3
Prupe.1G151700 Prunus persica HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 44.1
Rhsim04G0206800 Rhododendron simsii HOM05D000520 ORTHO05D000399 8.5e-06 55.1 76 39.5
RcHm_v2.0_Chr4g0418311 Rosa chinensis HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 45.8
Sc19g0004510 Simmondsia chinensis HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 44.1
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 45.8
TAR636G3323 Trochodendron aralioides HOM05D000520 ORTHO05D000399 8.5e-06 55.1 59 44.1
GSVIVG01021208001 Vitis vinifera HOM05D000262 ORTHO05D000300 8.5e-06 55.1 61 42.6


User provided reference genes

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