Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.4e-122 443.0 229 100.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.4e-109 399.8 229 90.4
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 9.0e-109 397.1 229 90.4
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 5.5e-106 387.9 229 88.6
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 7.1e-106 387.5 233 86.7
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.3e-104 383.3 229 86.5
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.5e-103 379.8 229 87.3
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.9e-103 379.4 229 86.0
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.9e-103 379.4 230 87.0
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.5e-103 379.0 229 86.5
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 229 85.6
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 9.6e-103 377.1 229 84.7
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.3e-102 376.7 229 85.6
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.6e-102 376.3 229 86.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.1e-102 375.9 229 86.0
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.7e-102 375.2 229 84.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.7e-102 375.2 221 87.3
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 8.2e-102 374.0 229 84.3
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.1e-101 373.6 229 84.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 1.1e-101 373.6 228 83.3
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-101 373.2 221 87.8
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.1e-101 372.1 229 83.8
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 4.0e-101 371.7 229 83.0
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 5.3e-101 371.3 228 83.3
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 5.3e-101 371.3 229 83.4
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 5.3e-101 371.3 230 83.0
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 5.3e-101 371.3 230 85.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 5.3e-101 371.3 230 85.2
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 6.9e-101 370.9 228 83.3
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 6.9e-101 370.9 229 83.4
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 6.9e-101 370.9 221 87.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 6.9e-101 370.9 230 84.8
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.0e-101 370.5 229 84.3
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-100 370.2 229 83.4
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.2e-100 370.2 229 83.8
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.5e-100 369.8 228 82.9
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.0e-100 369.4 229 86.0
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 2.0e-100 369.4 229 83.4
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.4e-100 368.6 229 82.5
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.5e-100 368.2 229 83.8
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.0e-99 367.1 228 82.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.3e-99 366.7 229 81.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.3e-99 366.7 229 81.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.3e-99 366.7 229 81.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.7e-99 366.3 229 81.7
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 2.9e-99 365.5 229 83.0
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.8e-99 365.2 229 82.1
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 6.5e-99 364.4 229 81.7
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 8.4e-99 364.0 229 82.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 8.4e-99 364.0 229 81.2
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.1e-98 363.6 229 81.7
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-98 363.6 229 83.0
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.4e-98 363.2 229 82.1
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.4e-98 363.2 230 82.6
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.9e-98 362.8 229 80.8
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.9e-98 362.8 229 81.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 83.3
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 2.5e-98 362.5 229 80.8
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 3.2e-98 362.1 229 82.5
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 3.2e-98 362.1 229 81.7
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 5.5e-98 361.3 229 79.9
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 5.5e-98 361.3 221 82.4
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.5e-98 361.3 229 81.2
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-97 360.1 229 81.2
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.6e-97 359.8 228 81.1
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.6e-97 359.8 229 79.5
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 2.1e-97 359.4 229 80.3
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 2.1e-97 359.4 229 80.8
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.1e-97 359.4 229 80.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.7e-97 359.0 229 80.3
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.7e-97 359.0 229 80.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 3.5e-97 358.6 230 80.4
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.5e-97 358.6 229 81.2
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 4.6e-97 358.2 229 79.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 6.0e-97 357.8 229 80.8
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 7.9e-97 357.5 229 79.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 7.9e-97 357.5 216 85.2
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 7.9e-97 357.5 229 80.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.0e-96 357.1 229 80.3
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.3e-96 355.9 229 79.5
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 3.9e-96 355.1 229 78.2
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.1e-96 354.8 217 83.4
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 6.7e-96 354.4 229 79.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.7e-96 354.0 220 84.1
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.9e-95 352.8 219 82.2
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.5e-95 352.4 202 90.1
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 7.4e-95 350.9 226 80.5
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.8e-94 349.0 229 78.2
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 6.3e-94 347.8 230 80.9
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.1e-93 347.1 216 84.3
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 1.4e-93 346.7 229 78.2
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.8e-93 346.3 216 82.9
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.1e-93 345.5 209 85.2
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 216 81.9
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 6.9e-93 344.4 216 80.6
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.2e-92 343.6 216 81.5
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 1.2e-92 343.6 212 84.0
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.6e-92 342.4 231 78.4
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 7.7e-92 340.9 215 80.5
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.0e-91 340.5 229 77.7
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.0e-91 340.5 216 79.6
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 6.5e-91 337.8 267 68.9
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.9e-90 336.3 217 80.2
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.5e-90 335.9 208 82.2
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 2.5e-90 335.9 227 77.5
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.5e-90 335.9 216 80.1
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.6e-89 333.2 209 82.8
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 3.6e-89 332.0 217 78.8
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.0e-88 330.5 207 81.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 1.8e-88 329.7 229 75.5
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 3.0e-88 328.9 239 73.6
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.1e-87 327.0 216 75.9
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.4e-85 319.3 216 75.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.8e-83 312.0 228 70.6
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 8.5e-83 310.8 193 81.3
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 5.5e-82 308.1 229 72.9
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.1e-81 306.2 198 80.8
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 4.7e-81 305.1 192 79.2
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.1e-77 292.4 197 76.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.2e-75 286.2 216 69.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 2.7e-73 279.3 197 77.2
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.6e-73 278.9 221 70.1
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 3.6e-73 278.9 218 67.0
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.0e-71 273.1 224 64.7
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.1e-69 265.8 231 66.2
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.6e-68 262.7 167 83.2
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 4.5e-68 261.9 166 78.9
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.5e-66 256.1 198 67.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 7.2e-66 254.6 229 65.1
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.2e-65 253.8 162 78.4
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 6.1e-65 251.5 195 70.3
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.0e-60 236.5 237 53.2
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 7.7e-60 234.6 155 76.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.3e-59 233.8 152 78.9
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.8e-56 223.4 166 72.3
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 3.4e-55 219.2 217 53.0
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.1e-50 204.1 203 58.1
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.3e-48 196.4 133 72.9
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.7e-43 180.3 114 83.3
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.2e-39 167.5 99 79.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.5e-34 149.8 117 68.4
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.2e-29 132.9 109 66.1
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-28 131.0 87 75.9
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.7e-27 127.1 94 71.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 4.7e-25 119.0 137 54.0
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.4e-23 112.5 112 59.8
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.6e-17 92.8 51 86.3
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 2.0e-15 87.0 65 67.7
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.4e-15 85.9 70 70.0
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.4e-13 79.0 100 49.0
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 4.6e-12 75.9 214 28.5
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 3.0e-11 73.2 70 52.9
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.3e-10 69.3 116 41.4
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-07 60.5 63 55.6


User provided reference genes

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