Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 9.4e-102 373.6 201 100.0
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 9.4e-70 267.3 204 72.1
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 2.1e-69 266.2 198 74.7
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 3.5e-56 222.2 178 62.9
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 1.3e-50 203.8 183 59.6
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 1.1e-49 200.7 178 59.6
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 1.1e-49 200.7 177 57.6
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 7.5e-43 177.9 180 56.1
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 1.7e-42 176.8 201 53.2
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 1.1e-41 174.1 181 50.3
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 6.0e-40 168.3 198 50.0
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 6.6e-39 164.9 171 55.6
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 1.1e-38 164.1 169 50.3
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 8.1e-37 157.9 178 48.3
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 1.4e-36 157.1 204 50.5
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 5.2e-36 155.2 178 48.3
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 8.9e-36 154.5 208 48.1
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 1.2e-35 154.1 186 46.2
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 1.5e-35 153.7 181 54.7
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 2.6e-35 152.9 178 46.1
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 2.6e-35 152.9 177 53.1
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 5.8e-35 151.8 178 48.3
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 1.3e-34 150.6 181 53.6
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.7e-34 150.2 159 47.8
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 2.2e-34 149.8 155 51.0
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 3.7e-34 149.1 190 50.5
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 6.4e-34 148.3 174 53.4
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 8.3e-34 147.9 191 50.8
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 8.3e-34 147.9 183 46.4
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 3.2e-33 146.0 181 43.1
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 3.2e-33 146.0 131 56.5
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 5.4e-33 145.2 156 55.8
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 5.4e-33 145.2 186 47.8
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 7.1e-33 144.8 155 45.8
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 1.2e-32 144.1 181 46.4
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 2.1e-32 143.3 177 53.1
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 6.0e-32 141.7 181 45.9
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 5.6e-30 135.2 178 44.4
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 5.6e-30 135.2 150 48.7
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 5.6e-30 135.2 183 39.9
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 6.2e-29 131.7 167 47.9
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 3.1e-28 129.4 182 39.6
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 3.1e-28 129.4 177 48.6
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 6.8e-28 128.3 140 47.1
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 1.2e-27 127.5 152 46.1
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 1.2e-27 127.5 131 50.4
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 1.2e-27 127.5 119 51.3
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 1.5e-27 127.1 203 36.5
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 1.5e-27 127.1 140 45.7
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 2.6e-27 126.3 174 38.5
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 3.4e-27 125.9 121 61.2
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 4.4e-27 125.6 132 48.5
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 5.8e-27 125.2 129 49.6
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 9.9e-27 124.4 131 48.9
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 3.8e-26 122.5 119 59.7
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 4.9e-26 122.1 119 47.9
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 4.9e-26 122.1 86 61.6
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 6.4e-26 121.7 134 45.5
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 6.4e-26 121.7 142 55.6
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 6.4e-26 121.7 175 46.3
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 4.2e-25 119.0 141 47.5
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 4.2e-25 119.0 141 47.5
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 4.2e-25 119.0 141 47.5
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 4.2e-25 119.0 142 48.6
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 4.2e-25 119.0 131 45.8
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 4.2e-25 119.0 176 42.6
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 4.2e-25 119.0 176 42.6
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 4.2e-25 119.0 176 42.6
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 5.4e-25 118.6 143 49.7
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 7.1e-25 118.2 172 37.2
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 7.1e-25 118.2 174 36.2
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 1.2e-24 117.5 169 37.3
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 1.2e-24 117.5 174 36.2
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 2.7e-24 116.3 181 36.5
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 2.7e-24 116.3 174 37.4
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 3.5e-24 115.9 205 33.2
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 4.6e-24 115.5 206 35.0
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 6.6e-23 111.7 73 61.6
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 4.7e-21 105.5 67 67.2
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 8.1e-21 104.8 120 51.7
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 8.1e-21 104.8 168 39.3
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 2.4e-20 103.2 137 37.2
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 4.0e-20 102.4 170 38.8
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 9.0e-20 101.3 177 33.3
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 1.2e-19 100.9 150 40.7
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 1.2e-19 100.9 175 34.3
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 1.2e-19 100.9 139 42.4
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 1.5e-19 100.5 147 47.6
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 2.6e-19 99.8 83 51.8
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 2.6e-19 99.8 150 38.0
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 7.6e-19 98.2 178 39.9
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 9.9e-19 97.8 163 39.9
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 1.1e-17 94.4 144 43.8
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 4.2e-17 92.4 120 36.7
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 1.6e-16 90.5 192 37.5
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 2.1e-16 90.1 84 52.4
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 6.0e-16 88.6 117 37.6
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 8.7e-15 84.7 121 47.9
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 8.7e-15 84.7 70 48.6
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 1.5e-14 84.0 144 43.1
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 2.5e-14 83.2 189 31.2
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 4.8e-13 79.0 75 57.3
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 1.8e-12 77.0 70 48.6
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 2.2e-10 70.1 60 45.0
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 6.7e-07 58.5 95 37.9
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 1.1e-06 57.8 48 54.2
CiPaw.01G042700 Carya illinoinensis HOM05D007181 ORTHO05D008722 1.9e-06 57.0 105 47.6
SMO203G0072 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 1.9e-06 57.0 46 45.7


User provided reference genes

Program Settings