Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-182 643.3 322 100.0
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 3.4e-146 521.9 319 81.8
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 8.7e-134 480.7 313 77.3
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 6.2e-132 474.6 312 75.3
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.5e-125 452.6 312 72.1
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.5e-125 452.6 312 72.1
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.9e-123 444.5 327 69.1
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 2.9e-121 439.1 310 70.3
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.2e-120 435.6 310 69.4
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 1.6e-119 433.3 309 70.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 5.1e-118 428.3 314 66.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 5.1e-118 428.3 312 67.6
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 8.7e-118 427.6 311 66.9
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.5e-117 426.8 320 66.2
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.5e-117 426.0 314 65.9
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.5e-117 426.0 311 66.6
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 4.3e-117 425.2 310 68.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.6e-116 423.3 308 68.5
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.2e-116 422.9 308 69.8
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.8e-116 422.5 308 68.8
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 8.2e-116 421.0 308 69.8
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.4e-115 420.2 314 66.6
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.4e-115 419.5 308 68.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.1e-115 419.1 312 68.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 3.4e-114 415.6 314 65.3
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 6.5e-113 411.4 312 65.4
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 8.5e-113 411.0 315 64.8
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.1e-112 410.6 310 64.5
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.9e-112 409.8 315 64.1
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.9e-112 409.8 310 66.1
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.2e-112 409.1 306 65.0
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.2e-112 409.1 359 58.8
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.2e-112 408.7 315 63.8
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 7.2e-112 407.9 311 63.3
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 9.4e-112 407.5 311 65.0
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 9.4e-112 407.5 309 66.7
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 9.4e-112 407.5 317 63.4
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.1e-111 406.4 314 65.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 2.7e-111 406.0 312 62.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 7.9e-111 404.4 308 63.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 8.8e-110 401.0 308 63.0
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.5e-109 399.4 315 63.2
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.3e-109 398.7 334 59.6
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 9.7e-109 397.5 305 63.9
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.7e-109 397.5 268 72.8
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.7e-108 396.7 308 65.6
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.2e-108 396.4 304 66.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.8e-108 396.0 306 65.0
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 2.8e-108 396.0 277 72.6
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 4.8e-108 395.2 304 66.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.1e-107 394.0 308 62.7
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.8e-107 393.3 310 63.9
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.8e-107 393.3 310 63.9
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 6.9e-107 391.3 307 65.1
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.5e-106 390.2 307 62.2
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.0e-106 389.8 288 68.8
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.0e-106 389.8 307 61.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 2.6e-106 389.4 312 61.5
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.8e-105 385.6 304 60.9
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.4e-104 383.6 279 65.2
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.9e-104 383.3 301 62.5
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.5e-104 382.9 308 61.0
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.7e-103 379.4 311 62.4
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 3.6e-103 379.0 308 59.4
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 7.9e-103 377.9 282 65.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 8.8e-102 374.4 311 59.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.5e-101 373.6 308 59.4
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.0e-101 373.2 279 62.0
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.0e-101 373.2 308 58.8
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 7.4e-101 371.3 307 59.9
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.7e-100 370.2 313 58.1
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 8.2e-100 367.9 284 62.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.1e-99 367.5 275 64.0
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.4e-99 367.1 330 57.0
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.4e-99 366.3 275 63.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.4e-99 366.3 332 55.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 4.1e-99 365.5 327 56.9
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 7.0e-99 364.8 308 59.7
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.7e-97 360.1 312 59.9
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.2e-96 355.9 312 60.6
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.2e-96 355.9 307 57.3
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.2e-96 355.5 312 59.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 9.4e-96 354.4 311 57.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 3.6e-95 352.4 310 59.0
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.0e-94 350.9 311 59.2
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.8e-94 350.1 306 57.8
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.8e-94 350.1 310 58.1
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.8e-94 350.1 307 55.7
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 5.2e-94 348.6 308 59.4
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-93 347.4 312 58.7
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.0e-93 346.7 316 56.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 2.6e-93 346.3 310 58.1
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.3e-93 345.9 312 57.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 3.3e-93 345.9 312 58.0
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 5.7e-93 345.1 312 58.3
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 7.5e-93 344.7 312 58.3
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.3e-92 344.0 312 58.0
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.7e-92 343.6 312 57.7
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.7e-92 343.6 309 58.6
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 3.7e-92 342.4 312 57.7
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.7e-92 342.4 309 57.6
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 8.2e-92 341.3 312 58.0
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.1e-91 340.9 312 57.1
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.4e-91 340.5 318 54.4
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.8e-91 340.1 277 60.3
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.2e-89 333.2 281 61.2
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.5e-88 330.5 280 60.4
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 3.2e-88 329.3 249 63.5
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 5.5e-88 328.6 242 66.5
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.7e-87 326.2 242 68.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 5.2e-86 322.0 217 72.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.2e-86 322.0 233 68.2
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.0e-82 310.1 277 56.3
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.2e-81 306.6 248 63.3
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 7.2e-80 301.6 268 57.8
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.6e-79 300.4 219 66.7
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.7e-74 283.1 264 54.5
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 8.0e-71 271.6 279 48.4
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 8.9e-70 268.1 276 48.2
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.2e-69 267.7 279 46.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 2.9e-68 263.1 316 47.2
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-58 231.1 194 67.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 4.6e-58 229.2 197 59.4
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.3e-56 221.9 191 59.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 4.7e-47 192.6 139 67.6
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.4e-43 180.3 288 40.6
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.4e-43 180.3 171 54.4
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 5.1e-41 172.6 113 74.3
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 8.4e-36 155.2 109 64.2
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 9.0e-22 108.6 117 47.9
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.4e-11 74.7 236 31.8
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.2e-10 71.6 136 36.0


User provided reference genes

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