Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 9.2e-165 583.6 312 100.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 1.5e-122 443.4 322 79.2
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 5.7e-114 414.8 323 74.6
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 3.6e-100 369.0 323 66.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 4.7e-100 368.6 315 69.8
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.4e-99 367.1 323 65.9
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.7e-97 360.1 328 60.4
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 2.8e-97 359.4 323 66.6
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 3.7e-97 359.0 321 65.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 8.2e-97 357.8 321 67.9
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 2.4e-96 356.3 314 62.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-96 356.3 322 66.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 9.1e-96 354.4 324 60.8
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.6e-95 353.6 323 61.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 3.5e-95 352.4 324 60.5
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-93 347.4 335 64.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 7.2e-93 344.7 323 63.5
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 6.1e-92 341.7 324 62.0
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 8.0e-92 341.3 321 65.1
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.0e-91 340.9 349 56.7
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.0e-91 340.9 325 57.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.4e-91 340.5 333 63.4
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.4e-91 340.5 325 63.4
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.3e-91 339.7 337 62.0
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.0e-91 339.3 326 65.0
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 5.2e-91 338.6 326 60.7
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 5.2e-91 338.6 326 61.7
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 8.8e-91 337.8 323 63.5
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 8.8e-91 337.8 326 60.7
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 8.8e-91 337.8 325 64.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.5e-90 337.0 323 63.5
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.0e-90 336.7 323 64.7
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.6e-90 336.3 323 63.2
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.4e-90 335.9 320 61.2
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 3.4e-90 335.9 323 61.6
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.3e-89 334.0 326 60.1
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.3e-89 334.0 326 61.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 4.8e-89 332.0 325 57.8
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 4.8e-89 332.0 323 63.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 4.8e-89 332.0 328 59.1
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 8.3e-89 331.3 322 59.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.4e-88 328.6 321 62.9
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 7.0e-88 328.2 323 62.5
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.2e-87 327.4 329 63.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.6e-87 327.0 322 64.0
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 2.0e-87 326.6 324 62.7
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.7e-87 326.2 325 57.2
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.7e-87 326.2 324 61.1
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 4.5e-87 325.5 327 56.9
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 4.5e-87 325.5 323 60.4
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.0e-86 324.3 324 59.9
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 5.0e-86 322.0 321 63.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 6.5e-86 321.6 325 54.8
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.5e-86 321.2 328 61.3
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.5e-86 321.2 321 56.1
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.9e-85 320.1 324 62.3
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.5e-85 319.7 290 67.6
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.2e-85 319.3 326 62.9
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.2e-85 318.9 321 61.7
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.2e-85 318.9 322 59.3
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.1e-84 316.6 321 59.2
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.1e-84 316.6 323 62.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.6e-84 315.8 324 63.9
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 2.3e-83 313.2 328 57.9
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.3e-83 313.2 323 61.3
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 6.8e-83 311.6 322 62.1
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.5e-82 310.5 335 60.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 4.4e-82 308.9 325 55.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 4.4e-82 308.9 324 55.9
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.3e-81 307.4 327 60.6
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.3e-81 307.4 321 60.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.2e-81 306.6 325 54.2
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.2e-81 306.6 326 61.3
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.4e-80 302.0 325 53.2
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 5.4e-80 302.0 331 58.6
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 7.0e-80 301.6 366 53.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 7.0e-80 301.6 366 53.8
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-79 300.4 348 57.2
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.7e-79 299.7 334 58.4
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.3e-78 296.6 290 65.5
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.9e-77 293.5 326 58.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.5e-77 293.1 324 54.0
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 3.3e-77 292.7 330 57.0
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.3e-77 292.7 345 49.0
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 4.3e-77 292.4 228 76.8
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 4.3e-77 292.4 324 59.0
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-76 290.0 327 59.0
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.1e-76 290.0 327 59.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.0e-75 287.7 229 66.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.4e-75 287.3 323 55.7
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.8e-75 287.0 319 52.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 3.0e-75 286.2 228 65.4
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.5e-74 283.9 322 52.5
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.6e-74 283.1 360 54.4
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.6e-74 283.1 360 54.4
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.4e-74 282.7 231 67.1
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.7e-73 280.4 335 54.9
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.7e-73 280.4 286 61.5
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.9e-73 279.6 228 74.1
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.7e-73 279.3 287 65.5
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.4e-72 277.3 272 59.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.8e-72 276.9 285 61.8
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 4.1e-72 275.8 324 56.8
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.6e-71 273.9 281 61.2
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.7e-71 273.1 243 60.5
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.7e-71 273.1 310 58.7
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 3.5e-71 272.7 287 59.6
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.9e-70 269.2 230 69.1
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.6e-70 268.5 230 69.1
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.5e-69 267.3 233 72.5
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 4.3e-69 265.8 272 57.7
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.6e-69 265.4 234 60.7
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 7.3e-69 265.0 234 63.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 4.7e-68 262.3 325 48.0
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.8e-66 254.6 229 69.4
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.2e-65 253.4 228 67.5
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 8.3e-65 251.5 228 66.2
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.1e-64 249.2 242 66.1
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 6.6e-62 241.9 309 48.9
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.4e-58 229.6 230 64.3
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 4.4e-58 229.2 229 61.6
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.4e-56 223.4 230 63.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.2e-55 221.1 238 63.0
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.6e-55 220.7 230 62.6
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.7e-54 217.2 238 56.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 3.3e-53 213.0 230 60.9
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 9.5e-53 211.5 231 56.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 9.5e-53 211.5 231 56.7
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.1e-51 206.5 301 43.5
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.6e-47 194.1 220 59.5
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 9.6e-45 184.9 162 63.6
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.4e-41 171.8 250 52.4
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.0e-38 164.9 209 56.9
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.3e-37 159.8 146 57.5
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 4.3e-37 159.5 155 54.8
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.8e-36 156.8 240 41.7
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.1e-36 155.2 185 47.6
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-32 144.4 137 71.5
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.7e-28 129.8 156 60.9
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 6.2e-28 129.0 338 37.0
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-27 127.9 118 73.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.4e-24 117.9 245 42.4
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 7.1e-24 115.5 93 64.5
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-22 110.9 137 48.2
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 5.6e-21 105.9 343 29.7
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 7.6e-18 95.5 132 43.9
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.0e-15 85.9 58 65.5
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 6.0e-15 85.9 78 52.6
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 7.9e-15 85.5 69 71.0
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 3.9e-14 83.2 58 69.0
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 3.9e-14 83.2 83 54.2
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 2.2e-12 77.4 74 51.4
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.3e-12 75.9 78 55.1
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 4.1e-11 73.2 189 25.4
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.2e-10 71.6 52 71.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.6e-10 70.5 50 74.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.2e-09 67.4 147 31.3


User provided reference genes

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