Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 3.2e-97 359.4 348 100.0
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.0e-87 327.8 172 98.3
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 6.4e-82 308.5 172 92.4
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.0e-79 301.2 169 91.7
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.1e-77 293.5 169 89.3
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.1e-77 293.5 169 89.3
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.7e-77 292.4 169 89.3
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 6.8e-76 288.5 172 86.0
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 5.8e-75 285.4 172 83.1
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 7.6e-75 285.0 172 84.3
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 2.2e-74 283.5 172 83.1
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 2.2e-74 283.5 172 82.6
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.9e-74 282.3 172 82.0
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 4.9e-74 282.3 172 81.4
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 6.4e-74 282.0 172 84.3
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 6.4e-74 282.0 172 82.0
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.4e-73 280.8 172 84.9
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.4e-73 280.8 172 83.7
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 1.4e-73 280.8 173 84.4
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.4e-73 280.0 172 81.4
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 3.2e-73 279.6 169 81.7
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 3.2e-73 279.6 172 81.4
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 4.2e-73 279.3 172 82.0
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 4.2e-73 279.3 172 82.0
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 4.2e-73 279.3 172 82.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 9.3e-73 278.1 172 82.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 9.3e-73 278.1 172 83.1
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 9.3e-73 278.1 172 81.4
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.2e-72 277.7 172 80.8
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.1e-72 276.9 172 82.6
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.1e-72 276.9 172 81.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 3.5e-72 276.2 172 82.0
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.5e-72 276.2 172 82.0
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 3.5e-72 276.2 171 82.5
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.0e-71 274.6 171 81.9
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.3e-71 274.2 168 82.1
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.3e-71 274.2 172 80.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.1e-71 272.3 172 80.8
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.1e-71 272.3 172 80.8
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 6.6e-71 271.9 172 79.1
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 6.6e-71 271.9 152 95.4
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 6.6e-71 271.9 168 81.5
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 8.7e-71 271.6 172 79.1
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.1e-70 271.2 172 80.2
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.1e-70 271.2 172 80.8
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 4.3e-70 269.2 172 79.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 9.6e-70 268.1 172 77.9
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.3e-69 267.7 171 79.5
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.4e-68 264.2 169 79.3
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 5.3e-68 262.3 172 75.6
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 9.0e-68 261.5 172 78.5
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 3.4e-67 259.6 172 77.3
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 4.4e-67 259.2 172 77.9
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 7.6e-67 258.5 172 79.1
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 9.9e-67 258.1 172 75.6
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.3e-66 257.7 172 76.7
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.7e-66 257.3 172 76.2
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.7e-66 257.3 172 76.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 3.8e-66 256.1 172 76.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.1e-65 254.6 168 76.2
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 1.4e-65 254.2 165 78.2
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 4.2e-65 252.7 172 75.0
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 5.4e-65 252.3 171 74.9
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 5.4e-65 252.3 171 74.9
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 5.4e-65 252.3 171 74.9
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 5.4e-65 252.3 171 74.9
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 5.4e-65 252.3 171 74.9
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 5.4e-65 252.3 171 75.4
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.2e-64 251.1 171 74.3
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.2e-64 251.1 217 64.5
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.1e-64 250.4 168 76.2
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.7e-64 250.0 167 76.6
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 3.5e-64 249.6 171 74.9
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 3.5e-64 249.6 171 74.9
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.7e-63 247.3 169 76.3
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 1.5e-62 244.2 169 74.0
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.5e-62 244.2 172 74.4
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.5e-62 243.4 200 65.0
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 4.3e-62 242.7 205 65.4
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 6.2e-61 238.8 149 82.6
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.1e-60 238.0 170 72.9
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 3.1e-60 236.5 172 71.5
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.5e-59 234.2 156 76.3
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 3.4e-59 233.0 196 64.8
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 7.6e-59 231.9 171 70.8
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 3.8e-58 229.6 150 79.3
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 6.4e-58 228.8 166 69.3
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 7.1e-57 225.3 164 67.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 4.6e-56 222.6 160 75.0
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 2.3e-55 220.3 168 66.7
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.9e-55 219.5 189 65.1
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.9e-54 217.2 150 76.0
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 4.3e-54 216.1 156 71.8
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 4.0e-52 209.5 164 65.9
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 6.5e-50 202.2 168 62.5
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.0e-47 194.9 119 88.2
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.3e-47 194.5 150 66.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.8e-47 194.1 132 72.0
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.6e-32 144.4 108 71.3
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.6e-32 144.4 108 71.3
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 3.6e-32 143.3 72 91.7
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 5.7e-30 136.0 67 92.5
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.1e-28 131.7 93 77.4
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.4e-28 131.3 65 93.8
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 4.5e-27 126.3 124 58.9
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.8e-23 114.4 163 42.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 5.2e-23 112.8 93 66.7
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 4.8e-21 106.3 169 37.3
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.4e-20 104.8 65 69.2
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 8.5e-18 95.5 96 61.5
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.5e-17 92.8 98 59.2
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 5.5e-17 92.8 69 75.4
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 5.5e-17 92.8 67 76.1
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.6e-16 91.3 67 67.2
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 4.7e-16 89.7 67 73.1
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.7e-11 73.9 51 78.4
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 2.5e-09 67.4 40 87.5
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 5.5e-09 66.2 75 54.7
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.4e-07 61.6 32 84.4
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 6.8e-07 59.3 39 79.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 4.4e-06 56.6 35 71.4


User provided reference genes

Program Settings