Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 2.5e-77 292.0 143 100.0
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 4.5e-74 281.2 139 98.6
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 7.0e-59 230.7 129 89.1
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.8e-54 216.1 147 72.8
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.3e-52 209.9 148 71.6
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 3.7e-52 208.4 148 69.6
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 3.1e-51 205.3 135 74.1
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 4.1e-51 204.9 145 69.7
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 3.5e-50 201.8 133 78.2
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.3e-49 199.9 135 73.3
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 5.5e-48 194.5 137 71.5
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 5.5e-48 194.5 137 71.5
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.1e-47 192.6 148 65.5
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.1e-47 192.6 148 65.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.1e-47 192.6 138 70.3
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 2.7e-47 192.2 146 64.4
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 6.1e-47 191.0 137 70.8
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.0e-46 188.3 141 63.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 6.8e-46 187.6 142 69.7
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.0e-45 186.0 148 63.5
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.7e-45 184.5 138 65.9
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 6.3e-44 181.0 142 63.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.8e-43 179.5 152 64.5
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 4.1e-43 178.3 137 68.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.0e-43 177.6 141 61.7
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 9.1e-43 177.2 124 68.5
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 9.1e-43 177.2 152 63.8
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.2e-42 176.8 124 66.9
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 4.5e-42 174.9 127 68.5
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.7e-42 174.1 138 61.6
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.0e-41 173.7 140 64.3
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.3e-41 173.3 130 69.2
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.3e-41 173.3 138 63.0
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.9e-41 172.2 140 67.9
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.9e-41 172.2 126 69.0
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 2.9e-41 172.2 126 70.6
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.8e-41 171.8 148 60.8
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.8e-41 171.8 148 60.8
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.0e-41 171.4 134 61.9
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 8.6e-41 170.6 110 74.5
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 4.2e-40 168.3 134 64.2
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.2e-40 168.3 146 64.4
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.1e-39 166.0 139 59.0
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 8.0e-39 164.1 141 62.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.4e-38 163.3 146 62.3
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.3e-38 162.5 144 58.3
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 3.0e-38 162.2 140 63.6
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 6.8e-38 161.0 150 56.7
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 8.9e-38 160.6 139 60.4
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 1.5e-37 159.8 137 62.8
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.4e-37 158.7 125 61.6
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.2e-36 156.0 128 60.9
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 8.3e-36 154.1 131 59.5
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.1e-35 153.7 137 62.0
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 3.1e-35 152.1 148 55.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.1e-35 151.8 140 55.7
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 7.0e-35 151.0 140 58.6
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 9.2e-35 150.6 148 56.1
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 1.6e-34 149.8 129 57.4
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.7e-33 146.4 126 60.3
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.9e-33 145.6 142 50.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.9e-33 145.6 124 58.9
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.1e-32 143.7 148 54.1
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.5e-32 143.3 137 60.6
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 4.3e-32 141.7 127 58.3
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 9.5e-32 140.6 166 51.8
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.8e-31 139.0 128 57.8
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 3.6e-31 138.7 143 49.7
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.6e-31 138.7 117 60.7
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.0e-30 135.6 99 66.7
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 3.0e-30 135.6 123 56.1
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 4.0e-30 135.2 154 51.3
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 5.2e-30 134.8 154 51.3
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 5.2e-30 134.8 125 56.8
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 8.9e-30 134.0 145 55.9
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.2e-29 133.7 128 53.1
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 3.4e-29 132.1 140 50.0
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 3.4e-29 132.1 126 56.3
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.8e-29 131.3 140 49.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.7e-28 129.8 89 66.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.7e-28 128.6 135 52.6
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 3.7e-28 128.6 137 51.8
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.7e-28 128.6 129 56.6
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 4.9e-28 128.3 127 55.9
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.9e-28 128.3 127 55.9
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.4e-27 126.7 133 53.4
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.4e-27 125.9 130 54.6
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.2e-27 125.6 109 55.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 4.1e-27 125.2 133 50.4
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 4.1e-27 125.2 122 56.6
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.1e-27 125.2 123 53.7
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 7.0e-27 124.4 117 53.8
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 9.2e-27 124.0 131 53.4
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 9.2e-27 124.0 125 56.8
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.2e-26 123.6 131 53.4
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.2e-26 123.6 141 52.5
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 3.0e-25 119.0 114 54.4
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.9e-25 118.6 120 58.3
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 5.0e-25 118.2 134 47.0
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 6.6e-25 117.9 127 48.0
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 6.6e-25 117.9 127 48.0
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 8.6e-25 117.5 126 51.6
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.1e-24 117.1 126 50.8
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.1e-24 117.1 126 50.8
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 3.3e-24 115.5 124 53.2
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 3.3e-24 115.5 124 53.2
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.6e-23 113.2 92 54.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.8e-23 112.5 113 51.3
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 3.6e-23 112.1 84 63.1
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 4.7e-23 111.7 134 48.5
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.0e-21 106.3 143 48.3
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.3e-20 103.6 84 59.5
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.2e-20 102.8 128 41.4
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.4e-20 101.3 135 44.4
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.4e-20 101.3 147 42.2
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.1e-19 100.5 115 49.6
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.4e-19 100.1 126 49.2
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 2.4e-19 99.4 145 43.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 3.2e-19 99.0 130 46.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 4.1e-19 98.6 103 54.4
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.0e-19 97.8 110 50.9
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 3.5e-18 95.5 130 43.1
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.5e-18 95.5 127 48.0
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.3e-17 93.6 130 47.7
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.7e-17 93.2 125 50.4
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 3.0e-17 92.4 125 49.6
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 5.0e-17 91.7 125 47.2
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 5.0e-17 91.7 125 49.6
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 5.0e-17 91.7 125 49.6
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 5.0e-17 91.7 125 49.6
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 6.6e-17 91.3 108 48.1
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 3.3e-16 89.0 123 48.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.7e-15 85.1 51 74.5
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 8.9e-14 80.9 124 42.7
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 4.4e-13 78.6 53 62.3
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 7.5e-13 77.8 123 43.1
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 9.9e-13 77.4 66 68.2
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 9.2e-11 70.9 143 34.3
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 1.6e-10 70.1 54 64.8
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 2.7e-10 69.3 59 61.0
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 1.6e-07 60.1 136 31.6
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.1e-06 57.4 77 45.5


User provided reference genes

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