Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 3.2e-75 285.0 145 100.0
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 9.2e-67 256.9 146 89.7
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 7.8e-66 253.8 147 89.8
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 4.3e-56 221.5 148 77.7
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 4.3e-56 221.5 148 77.7
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.8e-55 218.8 148 77.0
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 8.1e-55 217.2 151 76.2
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.1e-54 216.9 146 76.7
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 6.8e-54 214.2 145 76.6
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 2.0e-53 212.6 145 75.9
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 3.4e-53 211.8 147 73.5
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 4.4e-53 211.5 145 74.5
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 2.9e-52 208.8 145 75.2
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 6.4e-52 207.6 146 74.0
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 4.6e-50 201.4 146 74.0
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 6.6e-49 197.6 152 69.1
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 8.7e-49 197.2 151 70.2
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.5e-48 195.7 143 74.8
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 2.8e-47 192.2 144 71.5
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 3.6e-47 191.8 148 71.6
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.8e-46 189.5 144 73.6
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 6.9e-46 187.6 142 71.8
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 1.5e-45 186.4 143 70.6
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.5e-45 186.4 141 70.9
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 4.4e-45 184.9 142 71.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.7e-44 183.0 141 71.6
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.9e-44 182.2 149 70.5
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 2.9e-44 182.2 141 71.6
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 3.8e-44 181.8 141 70.2
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 6.4e-44 181.0 141 73.8
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.4e-44 180.6 145 71.7
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.4e-44 180.6 145 71.7
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.4e-43 179.9 141 70.9
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.2e-43 178.7 142 69.7
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.2e-43 178.7 139 69.8
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.2e-43 178.3 142 66.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 4.2e-43 178.3 124 74.2
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 9.3e-43 177.2 143 68.5
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.2e-42 176.8 142 68.3
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.2e-42 176.8 142 68.3
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 1.2e-42 176.8 143 67.1
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 1.6e-42 176.4 144 68.8
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.1e-42 176.0 144 67.4
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 2.7e-42 175.6 141 69.5
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 6.0e-42 174.5 144 67.4
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 7.8e-42 174.1 144 66.7
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 2.3e-41 172.6 142 66.2
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 3.9e-41 171.8 140 67.1
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 8.7e-41 170.6 141 67.4
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.5e-40 169.9 140 66.4
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 1.9e-40 169.5 145 63.4
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 4.3e-40 168.3 145 64.1
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 7.3e-40 167.5 143 67.1
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 7.3e-40 167.5 141 67.4
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 9.6e-40 167.2 143 64.3
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 9.6e-40 167.2 140 66.4
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.3e-39 166.8 144 66.0
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 1.3e-39 166.8 142 66.2
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.8e-39 165.6 147 62.6
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 3.6e-39 165.2 144 63.2
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 4.8e-39 164.9 141 66.0
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 6.2e-39 164.5 142 66.9
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 1.1e-38 163.7 143 65.0
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.4e-38 163.3 145 64.1
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.4e-38 163.3 147 62.6
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.4e-38 163.3 143 67.1
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.8e-38 162.9 141 65.2
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 2.4e-38 162.5 126 71.4
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 2.4e-38 162.5 140 65.7
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.1e-38 162.2 147 63.3
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 4.0e-38 161.8 141 62.4
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 5.3e-38 161.4 141 65.2
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 6.9e-38 161.0 142 62.0
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.5e-37 159.8 150 65.3
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.5e-37 159.8 149 63.8
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 2.0e-37 159.5 175 56.0
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.4e-37 158.7 140 60.7
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 5.8e-37 157.9 138 60.9
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 5.8e-37 157.9 143 62.9
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 2.9e-36 155.6 143 63.6
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.9e-36 155.6 146 61.6
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 2.9e-36 155.6 143 62.2
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 3.8e-36 155.2 148 63.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 3.8e-36 155.2 129 65.9
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 3.8e-36 155.2 142 59.9
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 4.9e-36 154.8 141 60.3
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 8.4e-36 154.1 125 68.8
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 8.4e-36 154.1 129 69.0
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.4e-35 153.3 122 68.9
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.4e-35 153.3 140 60.0
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.9e-35 152.9 146 61.0
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 4.2e-35 151.8 135 63.7
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 5.4e-35 151.4 129 65.1
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 5.4e-35 151.4 142 59.9
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 7.1e-35 151.0 123 69.1
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 9.3e-35 150.6 132 62.9
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 9.3e-35 150.6 142 59.2
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 2.7e-34 149.1 128 63.3
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 1.0e-33 147.1 141 57.4
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 2.3e-33 146.0 152 59.9
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 3.0e-33 145.6 141 61.0
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.5e-32 143.3 142 62.0
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 2.5e-32 142.5 128 64.1
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 2.5e-32 142.5 128 64.1
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 4.8e-31 138.3 135 63.7
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 6.2e-31 137.9 130 63.1
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.8e-30 136.3 123 59.3
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 2.0e-29 132.9 148 52.7
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 5.8e-29 131.3 126 63.5
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.7e-28 129.8 129 60.5
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.2e-28 129.4 144 51.4
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 6.4e-28 127.9 129 60.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.1e-27 127.1 91 75.8
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 1.1e-27 127.1 122 55.7
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.4e-27 125.9 124 58.1
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.5e-24 116.7 124 57.3
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 2.1e-23 112.8 125 53.6
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 3.1e-22 109.0 138 46.4
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 9.0e-22 107.5 89 68.5
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.6e-21 105.9 144 45.8
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.9e-19 99.8 145 44.1
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 5.5e-19 98.2 97 59.8
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 7.1e-19 97.8 128 49.2
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 8.7e-17 90.9 157 42.7
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 4.3e-16 88.6 108 57.4
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.8e-15 85.1 108 55.6
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 9.0e-14 80.9 91 51.6
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 5.1e-09 65.1 119 39.5
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 2.5e-08 62.8 42 69.0
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 3.3e-08 62.4 89 50.6
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.8e-07 59.3 99 39.4
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 1.8e-06 56.6 53 52.8


User provided reference genes

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