Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1188900 Malus domestica HOM05D002345 ORTHO05D002391 4.1e-19 97.1 49 100.0
MD03G1171100 Malus domestica HOM05D002345 ORTHO05D002391 1.9e-16 88.2 47 91.5
Prupe.4G255700 Prunus persica HOM05D002345 ORTHO05D002391 3.3e-16 87.4 47 91.5
GSVIVG01031545001 Vitis vinifera HOM05D002345 ORTHO05D002391 2.2e-12 74.7 47 76.6
vmacro04122 Vaccinium macrocarpon HOM05D002345 ORTHO05D002391 2.9e-12 74.3 47 78.7
CSS0033129 Camellia sinensis var. sinensis HOM05D002345 ORTHO05D002391 3.7e-12 73.9 47 76.6
CANSAT54G0547 Cannabis sativa HOM05D002345 ORTHO05D002391 3.7e-12 73.9 47 78.7
RcHm_v2.0_Chr5g0053371 Rosa chinensis HOM05D002345 ORTHO05D002391 3.7e-12 73.9 47 76.6
Atru.chr3.2636 Acer truncatum HOM05D002345 ORTHO05D002391 8.3e-12 72.8 47 76.6
FvH4_3g28360 Fragaria vesca HOM05D002345 ORTHO05D002391 1.9e-11 71.6 47 72.3
FAN16G0559 Fragaria x ananassa HOM05D002345 ORTHO05D002391 1.9e-11 71.6 47 72.3
CiPaw.13G154100 Carya illinoinensis HOM05D002345 ORTHO05D002391 3.2e-11 70.9 47 76.6
Manes.06G161700 Manihot esculenta HOM05D002345 ORTHO05D002391 3.2e-11 70.9 44 79.5
QL01p003745 Quercus lobata HOM05D002345 ORTHO05D002391 3.2e-11 70.9 47 78.7
TWI23G0801 Tripterygium wilfordii HOM05D002345 ORTHO05D002391 3.2e-11 70.9 47 74.5
FAN21G1575 Fragaria x ananassa HOM05D002345 ORTHO05D002391 4.1e-11 70.5 47 70.2
TAR623G1330 Trochodendron aralioides HOM05D002345 ORTHO05D002391 7.0e-11 69.7 47 74.5
TAR633G1899 Trochodendron aralioides HOM05D002345 ORTHO05D002391 7.0e-11 69.7 47 74.5
Actinidia16350 Actinidia chinensis HOM05D002345 ORTHO05D002391 1.2e-10 68.9 47 70.2
ClCG02G023110 Citrullus lanatus HOM05D002345 ORTHO05D002391 1.2e-10 68.9 43 81.4
MELO3C014576.2 Cucumis melo HOM05D002345 ORTHO05D002391 1.2e-10 68.9 43 81.4
CsaV3_6G039170 Cucumis sativus L. HOM05D002345 ORTHO05D002391 1.2e-10 68.9 43 81.4
FAN25G1021 Fragaria x ananassa HOM05D002345 ORTHO05D002391 1.6e-10 68.6 47 70.2
MD03G1171300 Malus domestica HOM05D002345 ORTHO05D002391 1.6e-10 68.6 37 91.9
Sed0010554 Sechium edule HOM05D002345 ORTHO05D002391 1.6e-10 68.6 43 81.4
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 2.0e-10 68.2 47 70.2
CARHR200670 Cardamine hirsuta HOM05D002345 ORTHO05D002391 2.7e-10 67.8 43 79.1
Thhalv10012476m.g Eutrema salsugineum HOM05D002345 ORTHO05D002391 2.7e-10 67.8 43 79.1
Actinidia17672 Actinidia chinensis HOM05D002345 ORTHO05D002391 4.6e-10 67.0 47 70.2
Dinv36221 Davidia involucrata HOM05D002345 ORTHO05D002391 7.8e-10 66.2 46 71.7
Ciclev10014072m.g Citrus clementina HOM05D002345 ORTHO05D002391 1.0e-09 65.9 47 70.2
Carub.0006s1094 Capsella rubella HOM05D002345 ORTHO05D002391 3.0e-09 64.3 43 74.4
Sp6g31200 Schrenkiella parvula HOM05D002345 ORTHO05D002391 3.0e-09 64.3 43 74.4
Nn7g36421 Nelumbo nucifera HOM05D002345 ORTHO05D002391 3.9e-09 63.9 47 66.0
Dinv39665 Davidia involucrata HOM05D002345 ORTHO05D002391 6.6e-09 63.2 47 63.8
AL6G23250 Arabidopsis lyrata HOM05D002345 ORTHO05D002391 8.6e-09 62.8 42 73.8
AT5G12430 Arabidopsis thaliana HOM05D002345 ORTHO05D002391 8.6e-09 62.8 42 73.8
Potri.009G050200 Populus trichocarpa HOM05D002345 ORTHO05D002391 8.6e-09 62.8 47 66.0
BcaB08g37002 Brassica carinata HOM05D002345 ORTHO05D002391 1.1e-08 62.4 43 69.8
A10p25400 Brassica napus HOM05D002345 ORTHO05D002391 1.1e-08 62.4 43 69.8
C09p64460 Brassica napus HOM05D002345 ORTHO05D002391 1.1e-08 62.4 43 69.8
BolC9t59281H Brassica oleracea HOM05D002345 ORTHO05D002391 1.1e-08 62.4 43 69.8
BraA10t44604Z Brassica rapa HOM05D002345 ORTHO05D002391 1.1e-08 62.4 43 69.8
Gohir.A05G070300 Gossypium hirsutum HOM05D002345 ORTHO05D002391 1.5e-08 62.0 45 68.9
Eucgr.J00737 Eucalyptus grandis HOM05D002345 ORTHO05D002391 1.9e-08 61.6 47 66.0
Cc01_g06230 Coffea canephora HOM05D002345 ORTHO05D002391 2.5e-08 61.2 45 66.7
Gohir.A13G217200 Gossypium hirsutum HOM05D002345 ORTHO05D002391 2.5e-08 61.2 48 60.4
Gohir.D13G220800 Gossypium hirsutum HOM05D002345 ORTHO05D002391 2.5e-08 61.2 48 60.4
Gorai.013G251800 Gossypium raimondii HOM05D002345 ORTHO05D002391 2.5e-08 61.2 48 60.4
GSVIVG01005044001 Vitis vinifera HOM05D002345 ORTHO05D002391 2.5e-08 61.2 45 66.7
COL.COLO4_36472 Corchorus olitorius HOM05D002345 ORTHO05D002391 3.3e-08 60.8 45 73.3
Gohir.D05G073300 Gossypium hirsutum HOM05D002345 ORTHO05D002391 3.3e-08 60.8 45 68.9
Gorai.009G074200 Gossypium raimondii HOM05D002345 ORTHO05D002391 3.3e-08 60.8 45 68.9
MSTRG.12456 Avicennia marina HOM05D002345 ORTHO05D002391 5.6e-08 60.1 42 71.4
Sabra16G0157100 Salix brachista HOM05D002345 ORTHO05D002391 5.6e-08 60.1 47 63.8
Duzib150G0243 Durio zibethinus HOM05D002345 ORTHO05D002391 9.5e-08 59.3 45 68.9
Solyc11g065260.3 Solanum lycopersicum HOM05D002345 ORTHO05D002391 9.5e-08 59.3 47 66.0
Sopen11g025010 Solanum pennellii HOM05D002345 ORTHO05D002391 9.5e-08 59.3 47 66.0
Thecc.09G240500 Theobroma cacao HOM05D002345 ORTHO05D002391 9.5e-08 59.3 45 71.1
Sabra09G0036800 Salix brachista HOM05D002345 ORTHO05D002391 1.2e-07 58.9 47 61.7
VMungo1127G2235 Vigna mungo HOM05D002345 ORTHO05D002391 1.2e-07 58.9 47 66.0
arahy.Tifrunner.gnm1.ann1.D7XUPH Arachis hypogaea HOM05D002345 ORTHO05D002391 1.6e-07 58.5 47 68.1
arahy.Tifrunner.gnm1.ann1.XW46IK Arachis hypogaea HOM05D002345 ORTHO05D002391 1.6e-07 58.5 47 68.1
Nitab4.5_0011829g0020 Nicotiana tabacum HOM05D002345 ORTHO05D002391 2.1e-07 58.2 47 63.8
Lalb_Chr19g0139711 Lupinus albus HOM05D002345 ORTHO05D002391 2.8e-07 57.8 47 63.8
PSO384G2553 Papaver somniferum HOM05D002345 ORTHO05D002391 2.8e-07 57.8 47 59.6
ECA248G0449 Erigeron canadensis HOM05D002345 ORTHO05D002391 3.6e-07 57.4 45 64.4
Lj3g0023990 Lotus japonicus HOM05D002345 ORTHO05D002391 3.6e-07 57.4 34 76.5
TPR.G22571 Trifolium pratense HOM05D002345 ORTHO05D002391 4.7e-07 57.0 34 76.5
ATR0721G063 Amborella trichopoda HOM05D002345 ORTHO05D002391 6.2e-07 56.6 47 59.6
Glyma.11G095300 Glycine max HOM05D002345 ORTHO05D002391 6.2e-07 56.6 33 78.8
Glyma.12G021400 Glycine max HOM05D002345 ORTHO05D002391 6.2e-07 56.6 33 78.8
Phvul.002G034200 Phaseolus vulgaris HOM05D002345 ORTHO05D002391 6.2e-07 56.6 42 64.3
Ca_11250_v3 Cicer arietinum L. HOM05D002345 ORTHO05D002391 8.1e-07 56.2 34 76.5
Phvul.011G078000 Phaseolus vulgaris HOM05D002345 ORTHO05D002391 8.1e-07 56.2 47 63.8
RcHm_v2.0_Chr6g0253551 Rosa chinensis HOM05D002345 ORTHO05D002391 8.1e-07 56.2 45 62.2
Hund07458 Selenicereus undatus HOM05D002345 ORTHO05D002391 8.1e-07 56.2 42 71.4
Lsat_1_v5_gn_6_26040 Lactuca sativa HOM05D002345 ORTHO05D002391 1.1e-06 55.8 45 62.2
PSO170G6613 Papaver somniferum HOM05D002345 ORTHO05D002391 1.1e-06 55.8 51 66.7
Rhsim04G0106700 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.1e-06 55.8 34 76.5
Cfa016771 Carpinus fangiana HOM05D002345 ORTHO05D002391 1.4e-06 55.5 47 61.7
Duzib168G0282 Durio zibethinus HOM05D002345 ORTHO05D002391 1.4e-06 55.5 45 64.4
Phvul.001G129000 Phaseolus vulgaris HOM05D002345 ORTHO05D002391 1.4e-06 55.5 47 59.6
Medtr4g076240 Medicago truncatula HOM05D002345 ORTHO05D002391 1.8e-06 55.1 34 76.5
Aqoxy2G00234 Aquilegia oxysepala HOM05D002345 ORTHO05D002391 2.3e-06 54.7 47 66.0
PSO339G4712 Papaver somniferum HOM05D002345 ORTHO05D002391 2.3e-06 54.7 47 57.4
VMungo1215G2642 Vigna mungo HOM05D002345 ORTHO05D002391 2.3e-06 54.7 38 68.4
Ca_22959_v3 Cicer arietinum L. HOM05D002345 ORTHO05D002391 3.1e-06 54.3 42 61.9
Dinv18677 Davidia involucrata HOM05D002345 ORTHO05D002391 3.1e-06 54.3 56 55.4
Medtr7g090940 Medicago truncatula HOM05D002345 ORTHO05D002391 3.1e-06 54.3 43 60.5
HanXRQChr11g0351561 Helianthus annuus HOM05D002345 ORTHO05D002391 4.0e-06 53.9 45 64.4
EL10Ac4g10190 Beta vulgaris HOM05D002345 ORTHO05D002391 5.2e-06 53.5 39 71.8
ECA233G2233 Erigeron canadensis HOM05D002345 ORTHO05D002391 5.2e-06 53.5 45 57.8
FAN11G2479 Fragaria x ananassa HOM05D002345 ORTHO05D002391 5.2e-06 53.5 37 70.3
Lalb_Chr01g0001141 Lupinus albus HOM05D002345 ORTHO05D002391 5.2e-06 53.5 47 57.4
TWI53G0447 Tripterygium wilfordii HOM05D002345 ORTHO05D002391 5.2e-06 53.5 47 59.6
CANSAT80G0360 Cannabis sativa HOM05D002345 ORTHO05D002391 6.8e-06 53.1 38 68.4
FvH4_6g24600 Fragaria vesca HOM05D002345 ORTHO05D002391 6.8e-06 53.1 45 57.8
FAN14G3366 Fragaria x ananassa HOM05D002345 ORTHO05D002391 6.8e-06 53.1 45 57.8
FAN20G2389 Fragaria x ananassa HOM05D002345 ORTHO05D002391 6.8e-06 53.1 45 60.0
PSO528G0041 Papaver somniferum HOM05D002345 ORTHO05D002391 6.8e-06 53.1 50 58.0
Psat7g179520 Pisum sativum HOM05D002345 ORTHO05D002391 6.8e-06 53.1 34 73.5
VMungo1383G2869 Vigna mungo HOM05D002345 ORTHO05D002391 6.8e-06 53.1 42 64.3
Manes.09G010500 Manihot esculenta HOM05D002345 ORTHO05D002391 8.9e-06 52.8 42 61.9
Potri.016G043900 Populus trichocarpa HOM05D002345 ORTHO05D002391 8.9e-06 52.8 35 71.4
PGR119G0483 Punica granatum HOM05D002345 ORTHO05D002391 8.9e-06 52.8 46 56.5


User provided reference genes

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