Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 1.4e-99 366.3 194 100.0
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 4.8e-71 271.6 197 76.6
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 4.8e-71 271.6 197 76.6
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 8.2e-71 270.8 201 75.1
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.0e-70 267.7 197 75.6
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 9.1e-70 267.3 196 75.5
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.5e-69 265.4 197 75.6
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 5.2e-65 251.5 194 73.2
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 6.8e-65 251.1 198 74.7
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 2.0e-64 249.6 186 74.2
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 2.6e-64 249.2 202 73.3
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 3.4e-64 248.8 196 75.5
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 1.7e-63 246.5 200 73.0
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 6.3e-63 244.6 185 75.7
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 1.4e-62 243.4 191 72.8
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 1.4e-62 243.4 160 85.0
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 1.8e-62 243.0 188 72.9
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 2.7e-61 239.2 196 70.9
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 5.9e-61 238.0 191 72.3
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 7.7e-61 237.7 193 70.5
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 1.7e-60 236.5 192 68.8
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 1.7e-60 236.5 191 71.7
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 2.9e-60 235.7 201 70.1
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 2.9e-60 235.7 192 71.9
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 3.8e-60 235.3 192 68.2
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 3.8e-60 235.3 194 70.1
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 5.0e-60 235.0 187 69.5
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 5.0e-60 235.0 187 69.5
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 1.5e-59 233.4 193 71.5
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 2.5e-59 232.6 194 69.6
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 3.2e-59 232.3 194 69.1
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 3.2e-59 232.3 200 69.0
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 7.2e-59 231.1 159 79.2
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 9.4e-59 230.7 194 69.6
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 1.2e-58 230.3 161 82.0
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.2e-58 230.3 193 68.9
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 1.6e-58 229.9 193 68.9
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 2.1e-58 229.6 177 71.2
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 2.1e-58 229.6 161 82.0
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.1e-58 229.6 187 70.1
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 2.1e-58 229.6 187 70.1
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 2.7e-58 229.2 168 74.4
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 3.6e-58 228.8 165 76.4
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 3.6e-58 228.8 159 78.0
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 4.7e-58 228.4 199 66.8
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 4.7e-58 228.4 200 65.0
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 4.7e-58 228.4 166 75.9
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 4.7e-58 228.4 193 67.4
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 6.1e-58 228.0 158 78.5
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 8.0e-58 227.6 188 68.6
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 8.0e-58 227.6 166 74.1
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 8.0e-58 227.6 166 74.1
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.0e-57 227.3 176 71.0
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.0e-57 227.3 193 68.4
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 1.0e-57 227.3 193 67.9
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.4e-57 226.9 148 83.8
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.4e-57 226.9 187 69.5
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 1.4e-57 226.9 193 68.9
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 1.4e-57 226.9 186 69.9
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 2.3e-57 226.1 201 65.7
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 2.3e-57 226.1 188 70.7
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 3.0e-57 225.7 195 65.6
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 4.0e-57 225.3 186 73.7
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 5.2e-57 224.9 194 67.0
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 8.8e-57 224.2 206 64.6
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 1.2e-56 223.8 158 78.5
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.5e-56 223.4 166 72.9
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 3.4e-56 222.2 168 74.4
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 5.7e-56 221.5 194 69.6
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 5.7e-56 221.5 184 69.6
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 5.7e-56 221.5 191 69.1
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 9.8e-56 220.7 185 67.6
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 1.7e-55 219.9 194 67.0
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 2.2e-55 219.5 197 66.5
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 2.8e-55 219.2 157 75.8
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 2.8e-55 219.2 194 66.0
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 2.8e-55 219.2 194 66.0
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 3.7e-55 218.8 185 68.6
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 6.3e-55 218.0 152 75.7
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 6.3e-55 218.0 196 69.9
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 8.3e-55 217.6 166 73.5
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 1.4e-54 216.9 200 66.0
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 1.8e-54 216.5 153 75.8
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 4.1e-54 215.3 186 66.7
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 7.0e-54 214.5 166 72.3
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 7.0e-54 214.5 166 72.3
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 7.0e-54 214.5 161 74.5
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 9.2e-54 214.2 190 66.8
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.2e-53 213.8 183 68.3
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 3.5e-53 212.2 192 66.1
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 4.5e-53 211.8 176 69.3
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 7.7e-53 211.1 170 70.6
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 1.0e-52 210.7 170 71.8
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.0e-52 210.7 151 77.5
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 2.9e-52 209.1 192 64.6
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 5.0e-52 208.4 186 66.7
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 6.6e-52 208.0 134 81.3
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.9e-51 206.5 194 67.0
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 4.3e-51 205.3 181 66.3
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 5.6e-51 204.9 163 70.6
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 2.6e-48 196.1 177 64.4
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 4.9e-47 191.8 197 56.9
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.8e-46 189.9 136 72.8
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 2.0e-45 186.4 141 67.4
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 1.7e-44 183.3 173 58.4
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 1.7e-44 183.3 118 83.1
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 3.0e-44 182.6 156 63.5
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 6.6e-44 181.4 118 84.7
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.5e-43 180.3 120 75.8
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 4.3e-43 178.7 156 62.8
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 5.6e-43 178.3 108 85.2
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.2e-40 170.6 129 71.3
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 1.2e-40 170.6 116 78.4
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 6.4e-39 164.9 133 63.9
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 9.2e-38 161.0 178 51.7
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 9.5e-35 151.0 140 55.0
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 1.4e-33 147.1 133 62.4
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 3.4e-32 142.5 141 63.1
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 2.9e-31 139.4 155 54.2
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.1e-29 133.3 86 83.7
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 4.6e-29 132.1 86 83.7
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 7.8e-29 131.3 86 82.6
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 3.6e-26 122.5 86 77.9
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 7.6e-24 114.8 136 53.7
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 2.9e-23 112.8 92 69.6
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.4e-22 110.5 78 76.9
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 4.6e-21 105.5 97 61.9
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 6.9e-17 91.7 59 71.2
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 4.9e-07 58.9 106 34.9


User provided reference genes

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