Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 2.3e-78 295.4 144 100.0
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 4.5e-74 281.2 144 94.4
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 5.2e-70 267.7 142 92.3
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 5.7e-61 237.7 145 81.4
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 1.3e-60 236.5 143 81.1
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 3.7e-60 235.0 152 76.3
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 6.3e-60 234.2 144 81.9
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 8.3e-60 233.8 146 79.5
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 8.3e-60 233.8 146 79.5
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 8.3e-60 233.8 146 79.5
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.4e-59 233.0 149 78.5
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 1.8e-59 232.6 149 77.9
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 3.1e-59 231.9 146 78.1
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 3.1e-59 231.9 146 78.1
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 3.1e-59 231.9 146 77.4
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 5.4e-59 231.1 150 79.3
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 7.0e-59 230.7 146 78.1
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 7.0e-59 230.7 146 77.4
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 7.0e-59 230.7 149 79.2
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.6e-58 229.6 152 74.3
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 2.0e-58 229.2 146 77.4
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 2.0e-58 229.2 146 77.4
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 3.5e-58 228.4 147 76.9
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 4.5e-58 228.0 146 77.4
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 4.5e-58 228.0 147 76.9
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 5.9e-58 227.6 146 78.8
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 5.9e-58 227.6 146 78.8
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.0e-57 226.9 146 78.8
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.3e-57 225.7 143 77.6
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 3.8e-57 224.9 148 76.4
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 3.8e-57 224.9 145 76.6
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 6.6e-57 224.2 149 73.2
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 8.6e-57 223.8 152 71.1
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.1e-56 223.4 143 78.3
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 1.1e-56 223.4 149 75.2
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.1e-56 223.4 149 73.2
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.5e-56 223.0 143 76.9
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 1.9e-56 222.6 145 75.9
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.9e-56 222.6 143 76.2
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 1.9e-56 222.6 148 74.3
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.3e-56 221.9 143 76.2
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 3.3e-56 221.9 151 76.2
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 4.3e-56 221.5 150 72.7
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 7.3e-56 220.7 142 76.1
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 7.3e-56 220.7 135 79.3
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 7.3e-56 220.7 147 73.5
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 7.3e-56 220.7 149 74.5
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 7.3e-56 220.7 150 72.0
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 9.5e-56 220.3 143 77.6
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 1.2e-55 219.9 145 74.5
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 1.6e-55 219.5 142 75.4
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.6e-55 219.5 145 75.2
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 2.1e-55 219.2 142 74.6
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 2.8e-55 218.8 118 85.6
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 2.8e-55 218.8 147 72.8
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 2.8e-55 218.8 143 74.8
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 3.6e-55 218.4 147 72.1
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 3.6e-55 218.4 149 73.8
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 3.6e-55 218.4 149 73.8
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 4.7e-55 218.0 147 72.8
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 4.7e-55 218.0 145 74.5
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.7e-55 218.0 143 74.1
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 6.1e-55 217.6 151 73.5
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 6.1e-55 217.6 143 74.8
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 8.0e-55 217.2 149 72.5
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 1.8e-54 216.1 143 75.5
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 3.0e-54 215.3 143 72.7
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 3.0e-54 215.3 144 73.6
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 4.0e-54 214.9 144 74.3
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 6.8e-54 214.2 139 72.7
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 6.8e-54 214.2 137 76.6
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 8.9e-54 213.8 136 75.7
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 1.5e-53 213.0 144 71.5
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 2.6e-53 212.2 145 73.1
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 5.8e-53 211.1 135 77.8
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 5.8e-53 211.1 145 72.4
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.3e-52 209.9 150 70.7
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 1.7e-52 209.5 144 71.5
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 2.2e-52 209.1 137 74.5
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 2.2e-52 209.1 136 73.5
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 4.9e-52 208.0 143 73.4
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 4.9e-52 208.0 138 73.2
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 4.9e-52 208.0 138 74.6
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 1.1e-51 206.8 144 73.6
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 1.8e-51 206.1 119 79.8
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 1.8e-51 206.1 148 73.0
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.8e-51 206.1 144 73.6
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 2.4e-51 205.7 142 71.1
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.4e-51 205.7 144 72.9
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 2.0e-50 202.6 146 69.2
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 2.0e-50 202.6 141 69.5
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 3.5e-50 201.8 113 80.5
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 1.0e-49 200.3 145 69.7
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 1.7e-49 199.5 114 78.1
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.7e-49 199.5 145 70.3
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 6.6e-49 197.6 139 71.9
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.1e-48 196.8 141 70.9
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.9e-48 196.1 139 71.9
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 3.6e-47 191.8 143 66.4
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 6.2e-47 191.0 116 78.4
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 2.3e-46 189.1 146 69.9
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 6.8e-46 187.6 115 74.8
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 6.8e-46 187.6 143 67.1
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.2e-45 186.8 140 67.9
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 9.8e-45 183.7 142 66.2
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 6.4e-44 181.0 89 93.3
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 1.9e-43 179.5 99 81.8
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 4.6e-42 174.9 145 61.4
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.0e-41 172.2 148 61.5
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.5e-40 169.9 145 62.1
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 5.6e-40 167.9 136 62.5
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 7.3e-40 167.5 119 71.4
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 2.8e-39 165.6 120 71.7
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 6.2e-39 164.5 115 75.7
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.1e-38 163.7 87 85.1
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 8.3e-36 154.1 89 78.7
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 1.9e-35 152.9 120 65.0
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 6.0e-34 147.9 117 64.1
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 1.9e-32 142.9 111 65.8
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 5.6e-32 141.4 114 64.0
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.1e-31 139.4 113 66.4
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 2.0e-29 132.9 145 53.1
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 4.9e-28 128.3 102 62.7
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 1.4e-27 126.7 114 61.4
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 5.4e-27 124.8 90 72.2
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 3.9e-25 118.6 118 59.3
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 2.8e-23 112.5 71 84.5
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 2.0e-21 106.3 71 80.3
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 3.4e-21 105.5 91 53.8
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.1e-19 100.5 89 59.6
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 1.6e-18 96.7 92 48.9
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 6.2e-15 84.7 82 61.0
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 4.5e-13 78.6 157 36.9
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 7.6e-13 77.8 69 62.3


User provided reference genes

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