Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.1e-280 968.4 492 100.0
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 4.0e-263 911.0 492 94.1
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.0e-234 816.6 505 82.6
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.9e-217 759.2 504 78.6
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.4e-215 753.1 504 78.0
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.8e-215 752.7 504 78.0
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.4e-215 752.3 504 78.0
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 9.9e-214 746.9 503 77.5
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.2e-198 696.8 499 71.3
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 3.9e-194 681.8 497 71.0
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 5.3e-191 671.4 497 70.4
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 2.0e-190 669.5 513 69.0
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 3.4e-190 668.7 501 69.3
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.4e-186 656.8 437 75.5
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.5e-185 653.3 495 69.5
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 9.1e-183 644.0 496 68.1
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 5.9e-182 641.3 493 68.6
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.2e-181 639.4 501 66.7
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.1e-180 637.1 594 58.8
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.5e-180 636.0 499 66.5
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 4.2e-180 635.2 503 67.6
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.2e-179 633.6 477 68.8
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 2.7e-179 632.5 490 69.0
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 8.0e-179 630.9 502 67.7
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 8.0e-179 630.9 492 66.5
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 1.0e-178 630.6 493 68.0
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.6e-177 625.9 498 67.5
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 7.4e-177 624.4 491 65.4
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 9.7e-177 624.0 500 66.2
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 3.1e-175 619.0 500 65.8
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 9.1e-175 617.5 493 67.1
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 2.0e-174 616.3 493 66.5
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 2.2e-173 612.8 497 66.8
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.9e-173 612.5 501 65.3
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 9.4e-172 607.4 513 63.7
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.0e-170 604.0 492 64.4
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.2e-169 600.5 495 62.8
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.6e-169 599.4 494 65.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 7.5e-169 597.8 512 63.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 9.7e-169 597.4 498 63.9
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 6.3e-168 594.7 511 62.6
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.4e-167 593.6 495 62.2
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.8e-167 593.2 495 61.4
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 2.4e-167 592.8 496 63.1
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.4e-167 592.8 500 62.8
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 3.1e-167 592.4 491 62.7
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.9e-166 588.2 506 63.8
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 5.9e-166 588.2 501 64.3
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 7.7e-166 587.8 444 67.3
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 1.3e-165 587.0 493 61.7
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 2.9e-165 585.9 501 61.9
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 2.9e-165 585.9 498 62.2
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 5.0e-165 585.1 494 61.3
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.1e-164 583.9 493 61.5
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 2.7e-163 579.3 493 60.4
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.7e-163 579.3 488 63.5
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 5.7e-161 571.6 495 63.2
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 8.3e-160 567.8 437 67.7
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.1e-159 567.4 445 67.0
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.1e-159 567.4 490 61.0
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.1e-159 567.4 499 61.3
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 5.4e-159 565.1 468 63.2
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.4e-159 565.1 487 61.4
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.6e-158 563.5 495 60.2
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.6e-158 563.5 505 60.0
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.9e-157 559.3 445 64.7
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.8e-157 558.9 436 64.7
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 3.8e-157 558.9 510 59.6
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 3.8e-157 558.9 510 59.6
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.5e-156 556.2 445 64.7
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 5.5e-156 555.1 454 63.0
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 5.5e-156 555.1 492 60.4
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 7.2e-156 554.7 490 60.4
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.6e-155 553.5 492 60.4
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.0e-154 550.8 505 59.6
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 2.3e-154 549.7 511 58.7
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.2e-154 548.5 500 57.4
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 5.2e-154 548.5 476 61.3
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 8.9e-154 547.7 436 64.2
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.2e-153 547.4 434 65.0
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 9.8e-153 544.3 502 59.6
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.3e-152 543.9 505 58.2
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.7e-152 543.5 432 63.9
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 3.7e-152 542.3 500 58.8
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.1e-151 540.8 494 57.9
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.4e-151 538.5 506 55.5
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.7e-149 533.5 437 63.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 2.3e-149 533.1 444 62.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 2.9e-149 532.7 511 57.1
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 6.6e-149 531.6 495 60.4
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 8.6e-149 531.2 483 58.0
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.2e-147 527.3 498 56.6
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 6.1e-147 525.0 496 56.7
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.3e-144 517.3 433 63.3
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 2.2e-144 516.5 433 62.8
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.1e-143 514.2 500 56.6
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 2.0e-142 510.0 500 57.2
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.7e-142 509.6 514 55.4
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.3e-141 507.3 500 56.0
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 2.5e-140 503.1 511 54.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.2e-139 500.7 500 55.0
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 3.6e-139 499.2 478 57.7
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 8.0e-139 498.0 494 56.1
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 4.0e-138 495.7 444 60.8
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 8.9e-138 494.6 484 56.0
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 3.7e-136 489.2 465 57.0
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 9.2e-135 484.6 425 61.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.1e-134 483.4 484 53.7
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.1e-134 483.4 442 58.6
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.7e-133 480.3 495 56.6
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.5e-132 477.2 515 53.4
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 5.2e-130 468.8 498 52.2
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 3.5e-126 456.1 396 62.6
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.2e-121 441.0 434 58.8
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 4.4e-121 439.1 426 55.4
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.7e-117 427.2 414 58.5
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.3e-116 422.5 386 58.8
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.6e-115 420.6 488 49.8
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.8e-114 417.2 300 66.3
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 9.9e-113 411.4 495 48.1
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 6.9e-106 388.7 326 60.7
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 3.8e-104 382.9 308 62.3
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.2e-103 379.8 435 51.0
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 5.1e-101 372.5 361 56.8
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 4.5e-97 359.4 456 44.5
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 6.0e-94 349.0 307 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 9.3e-87 325.1 480 41.2
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 4.6e-86 322.8 476 41.6
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.5e-84 317.8 213 71.8
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 2.9e-80 303.5 236 61.9
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.1e-79 301.6 298 53.7
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.8e-75 286.2 316 54.4
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 3.4e-73 280.0 312 49.0
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.7e-70 269.6 230 66.5
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 5.7e-68 262.7 191 66.5
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.6e-65 253.8 462 34.4
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-52 211.8 192 56.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 9.1e-50 202.2 131 71.0
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 2.5e-39 167.5 417 29.7
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.4e-37 161.8 337 32.6
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 1.8e-37 161.4 80 92.5
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 3.5e-33 147.1 128 58.6
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.5e-31 141.7 82 76.8
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.8e-30 137.5 215 38.1
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-26 125.6 84 69.0
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 7.3e-23 112.8 129 54.3
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.7e-19 101.7 155 40.6
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.2e-17 95.5 66 66.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.6e-17 95.1 65 67.7
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 7.8e-17 92.8 65 66.2
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 9.9e-12 75.9 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 4.9e-11 73.6 46 71.7
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.0e-08 65.9 183 30.1
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 3.0e-08 64.3 67 50.7
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 8.1e-06 56.2 101 36.6


User provided reference genes

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