Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 3.0e-110 401.7 191 100.0
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.5e-74 282.0 191 70.2
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 3.3e-72 275.4 194 70.6
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 7.9e-66 254.2 178 68.5
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 3.0e-65 252.3 191 63.4
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 3.0e-65 252.3 181 66.3
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 8.7e-65 250.8 178 66.3
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.6e-63 246.5 178 65.2
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.6e-63 246.5 178 65.2
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 2.1e-63 246.1 169 68.0
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 3.1e-62 242.3 178 61.8
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 3.1e-62 242.3 178 64.0
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 6.9e-62 241.1 190 62.1
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 2.6e-61 239.2 187 62.0
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 3.4e-61 238.8 173 64.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 4.5e-61 238.4 178 64.6
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 5.8e-61 238.0 178 63.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 7.6e-61 237.7 190 60.5
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 9.9e-61 237.3 178 65.7
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.7e-60 236.5 178 62.4
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 2.2e-60 236.1 178 62.4
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 2.9e-60 235.7 189 59.8
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.4e-60 234.2 178 60.7
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 2.4e-59 232.6 192 60.4
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 4.2e-59 231.9 190 56.8
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 9.3e-59 230.7 178 59.6
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 2.7e-58 229.2 178 61.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 6.0e-58 228.0 190 57.9
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 6.0e-58 228.0 178 58.4
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.0e-57 227.3 178 59.6
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.0e-57 227.3 178 60.7
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.8e-57 226.5 179 60.3
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.0e-57 225.7 178 59.6
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.5e-56 223.4 188 54.8
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.5e-56 223.4 178 58.4
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.9e-56 223.0 178 57.3
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.9e-56 223.0 178 59.0
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.5e-56 222.6 180 58.9
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 3.3e-56 222.2 178 57.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 4.3e-56 221.9 185 56.8
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 4.3e-56 221.9 178 59.0
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.6e-56 221.5 163 62.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 5.6e-56 221.5 178 57.3
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 7.4e-56 221.1 192 58.3
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 7.4e-56 221.1 178 58.4
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 9.6e-56 220.7 185 56.2
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.3e-55 220.3 178 56.7
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.6e-55 219.9 178 57.3
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 2.1e-55 219.5 178 57.3
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 2.8e-55 219.2 178 60.7
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 3.7e-55 218.8 178 57.3
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.7e-55 218.8 179 57.0
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 4.8e-55 218.4 182 54.9
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 6.2e-55 218.0 191 56.0
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 8.1e-55 217.6 178 60.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.4e-54 216.9 190 55.8
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.8e-54 216.5 178 56.7
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 9.0e-54 214.2 178 57.3
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 9.0e-54 214.2 196 54.1
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.2e-53 213.8 205 51.7
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 4.5e-53 211.8 184 51.1
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 7.6e-53 211.1 179 58.7
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.3e-52 210.3 183 56.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.9e-52 209.1 178 53.4
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 4.9e-52 208.4 178 55.1
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 4.9e-52 208.4 190 54.7
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.7e-50 202.6 179 52.5
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.6e-50 201.8 197 50.8
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 2.3e-49 199.5 178 51.1
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 5.1e-49 198.4 190 51.6
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 6.7e-49 198.0 179 52.0
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.9e-48 196.4 182 49.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 4.3e-48 195.3 178 51.7
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 4.3e-48 195.3 178 53.4
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 5.7e-48 194.9 178 51.1
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 9.6e-48 194.1 207 49.3
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.1e-47 193.0 181 51.4
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 6.3e-47 191.4 192 47.4
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 8.2e-47 191.0 178 54.5
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.8e-46 189.9 178 51.7
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.8e-46 189.9 178 55.1
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 2.4e-46 189.5 182 48.9
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 6.9e-46 188.0 192 46.9
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.6e-45 186.0 192 45.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.4e-45 185.7 192 45.8
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 3.4e-45 185.7 190 48.4
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 7.6e-45 184.5 185 48.6
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 1.0e-44 184.1 173 52.0
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.0e-44 184.1 190 46.8
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.3e-44 183.7 192 45.3
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.3e-44 183.7 173 51.4
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.3e-44 183.7 179 50.3
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 5.0e-44 181.8 192 45.8
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 5.0e-44 181.8 178 48.3
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 5.0e-44 181.8 185 47.6
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.0e-44 181.8 176 50.0
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 6.5e-44 181.4 180 47.8
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 8.5e-44 181.0 180 47.2
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.1e-43 180.6 181 49.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.1e-43 180.6 178 52.8
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.5e-43 179.5 159 54.1
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.2e-43 179.1 140 60.0
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 4.2e-43 178.7 192 44.3
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 5.5e-43 178.3 180 47.8
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 9.3e-43 177.6 128 64.8
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 7.9e-42 174.5 133 60.9
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 7.9e-42 174.5 176 45.5
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 3.9e-41 172.2 179 48.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 2.8e-39 166.0 119 64.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.4e-38 163.7 155 49.7
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.9e-37 158.3 119 63.9
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.9e-36 156.0 178 43.8
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.9e-35 153.3 190 43.7
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.6e-34 150.2 191 41.9
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 7.9e-34 147.9 181 40.9
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 2.0e-32 143.3 178 45.5
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 7.4e-32 141.4 107 65.4
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.3e-31 140.6 182 41.2
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 3.7e-31 139.0 107 65.4
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 9.1e-30 134.4 182 39.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-29 134.0 107 64.5
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.4e-27 127.1 92 65.2
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.3e-23 114.0 184 37.5
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.0e-21 106.7 85 60.0
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.5e-21 105.9 85 60.0
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.0e-20 104.4 83 60.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.5e-19 100.5 91 50.5
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.3e-17 93.2 92 48.9
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.2e-16 90.9 92 46.7
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 8.2e-15 84.7 101 41.6
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.2e-13 80.9 71 52.1
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 3.6e-10 69.3 42 81.0
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 6.3e-07 58.5 42 66.7


User provided reference genes

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