Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 1.0e-165 586.6 288 100.0
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 1.0e-149 533.5 288 90.6
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 2.0e-134 482.6 287 80.8
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 5.0e-133 478.0 288 79.2
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 9.5e-132 473.8 288 78.5
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.6e-121 439.1 362 62.4
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 3.9e-117 425.2 276 72.5
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 6.6e-117 424.5 285 68.8
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 1.4e-114 416.8 287 67.2
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 5.2e-114 414.8 279 68.8
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 5.2e-114 414.8 281 69.4
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 1.5e-113 413.3 276 70.3
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 2.0e-113 412.9 257 75.1
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 5.4e-111 404.8 276 68.5
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 5.4e-111 404.8 268 70.1
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 7.1e-111 404.4 268 69.4
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 2.7e-110 402.5 289 64.0
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 2.7e-110 402.5 268 69.8
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 1.7e-109 399.8 267 70.0
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.7e-109 399.8 276 68.1
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.0e-109 399.1 248 73.4
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 5.1e-109 398.3 269 69.9
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 1.5e-108 396.7 284 65.5
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 1.9e-108 396.4 254 72.0
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 5.6e-108 394.8 253 71.1
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 5.6e-108 394.8 274 67.9
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 1.6e-107 393.3 263 68.1
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.8e-107 392.5 276 66.3
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 2.8e-107 392.5 276 66.3
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.8e-106 389.8 276 65.6
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 1.2e-105 387.1 238 72.3
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.6e-105 386.0 253 69.6
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 3.4e-105 385.6 264 67.4
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.3e-104 383.6 276 64.5
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 1.3e-104 383.6 241 71.0
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 3.2e-103 379.0 209 85.2
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 1.6e-102 376.7 277 63.9
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.3e-101 372.9 277 63.5
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 3.0e-101 372.5 212 84.0
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.8e-98 363.2 286 59.8
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 5.3e-98 361.7 275 62.9
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.2e-96 356.3 270 62.2
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 3.9e-93 345.5 307 53.1
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 5.1e-93 345.1 217 70.0
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 2.0e-89 333.2 258 60.1
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 2.9e-88 329.3 250 63.6
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 3.8e-88 328.9 211 70.6
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.0e-85 320.9 244 62.7
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 8.2e-83 311.2 219 68.5
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 4.1e-82 308.9 274 55.1
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 1.3e-80 303.9 246 57.3
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 2.7e-78 296.2 247 58.3
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 1.3e-75 287.3 260 55.4
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 1.2e-73 280.8 234 56.8
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 2.2e-72 276.6 189 65.6
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.9e-71 273.5 231 56.7
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 7.2e-71 271.6 180 66.7
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 5.1e-69 265.4 212 59.9
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 6.3e-67 258.5 247 53.4
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 6.3e-67 258.5 263 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 2.4e-66 256.5 270 46.7
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 1.2e-65 254.2 185 65.4
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.1e-63 247.7 247 47.4
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.6e-62 243.8 247 45.7
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.7e-62 243.0 259 45.9
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 1.8e-61 240.4 154 68.2
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.3e-61 240.0 265 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 5.2e-61 238.8 247 46.2
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 8.8e-61 238.0 248 46.0
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 3.3e-60 236.1 168 62.5
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 9.4e-55 218.0 216 50.0
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 1.2e-52 211.1 257 38.9
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 4.1e-50 202.6 247 38.5
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 4.1e-50 202.6 247 38.5
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.5e-49 199.5 243 37.0
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 4.7e-46 189.1 137 62.8
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 1.8e-42 177.2 144 58.3
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 1.8e-37 160.6 97 76.3
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 2.3e-37 160.2 104 73.1
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 7.0e-34 148.7 97 72.2
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 7.0e-34 148.7 97 72.2
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 2.9e-32 143.3 87 72.4
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 2.9e-32 143.3 88 72.7
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 1.8e-26 124.0 103 55.3
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 7.3e-23 112.1 77 63.6
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 1.2e-22 111.3 117 47.0
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 6.2e-22 109.0 66 80.3
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.1e-10 69.7 43 69.8
AagrBONN_evm.TU.Sc2ySwM_117.2524 Anthoceros agrestis HOM05D007819 ORTHO05D009848 2.7e-09 67.0 51 52.9


User provided reference genes

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