Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 2.5e-81 305.4 162 100.0
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 2.0e-33 146.4 82 93.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 4.1e-31 138.7 82 87.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 2.2e-29 132.9 82 86.6
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 2.3e-26 122.9 82 81.7
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.3e-26 122.9 82 81.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.0e-26 122.1 82 81.7
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 4.0e-26 122.1 82 81.7
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.8e-26 120.9 82 80.5
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.8e-26 120.9 82 80.5
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 2.2e-24 116.3 82 74.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.8e-24 115.9 82 74.4
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 6.3e-24 114.8 82 72.0
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.4e-23 113.6 79 74.7
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.8e-23 113.2 79 77.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.8e-23 113.2 82 72.0
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.8e-23 113.2 82 72.0
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.8e-23 113.2 82 72.0
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.4e-23 112.8 82 70.7
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 3.1e-23 112.5 79 72.2
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.1e-23 112.1 78 74.4
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.1e-23 112.1 82 73.2
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 5.3e-23 111.7 79 73.4
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 7.0e-23 111.3 79 73.4
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.2e-22 110.5 82 70.7
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.2e-22 110.5 82 70.7
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.2e-22 110.5 79 70.9
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-22 110.5 82 70.7
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-22 110.5 82 70.7
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.6e-22 110.2 82 72.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.6e-22 110.2 79 72.2
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.6e-22 110.2 79 73.4
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 2.7e-22 109.4 79 73.4
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.5e-22 109.0 82 69.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.5e-22 108.6 82 70.7
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.5e-22 108.6 79 72.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 5.9e-22 108.2 82 68.3
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 7.7e-22 107.8 82 68.3
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 7.7e-22 107.8 82 68.3
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 7.7e-22 107.8 79 69.6
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.0e-21 107.5 82 67.1
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.0e-21 107.5 82 67.1
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.3e-21 107.1 79 70.9
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.3e-21 107.1 82 67.1
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.3e-21 107.1 82 67.1
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.7e-21 106.7 82 67.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.7e-21 106.7 82 65.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.9e-21 105.9 82 65.9
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 2.9e-21 105.9 90 65.6
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 3.8e-21 105.5 79 69.6
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.8e-21 105.5 82 67.1
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.8e-21 105.5 82 67.1
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 5.0e-21 105.1 82 65.9
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.0e-21 105.1 82 64.6
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 5.0e-21 105.1 82 65.9
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 5.0e-21 105.1 82 65.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 6.5e-21 104.8 82 68.3
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 6.5e-21 104.8 82 68.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 8.5e-21 104.4 82 65.9
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.5e-20 103.6 82 65.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.9e-20 103.2 79 70.9
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.9e-20 103.2 79 65.8
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.5e-20 102.8 82 64.6
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 2.5e-20 102.8 79 67.1
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.2e-20 102.4 101 59.4
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.2e-20 102.1 79 68.4
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.5e-20 101.7 82 63.4
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 7.2e-20 101.3 79 64.6
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 9.4e-20 100.9 76 67.1
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 9.4e-20 100.9 82 64.6
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 9.4e-20 100.9 79 69.6
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.2e-19 100.5 82 63.4
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.2e-19 100.5 85 61.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.6e-19 100.1 79 68.4
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.6e-19 100.1 82 68.3
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.6e-19 100.1 82 61.0
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.7e-19 99.4 79 67.1
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.7e-19 99.4 79 68.4
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.7e-19 99.4 82 61.0
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 2.7e-19 99.4 79 67.1
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 3.6e-19 99.0 79 67.1
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 3.6e-19 99.0 82 63.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 4.7e-19 98.6 79 67.1
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.7e-19 98.6 82 61.0
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.7e-19 98.6 79 67.1
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 6.1e-19 98.2 79 63.3
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 6.1e-19 98.2 78 65.4
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 6.1e-19 98.2 82 64.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 6.1e-19 98.2 82 63.4
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 6.1e-19 98.2 82 59.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 8.0e-19 97.8 76 67.1
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.0e-19 97.8 79 62.0
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.0e-18 97.4 95 56.8
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.4e-18 97.1 79 60.8
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.8e-18 96.7 76 67.1
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 2.3e-18 96.3 79 60.8
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 2.3e-18 96.3 79 60.8
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-18 96.3 79 60.8
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.3e-18 96.3 79 63.3
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 2.3e-18 96.3 113 48.7
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.0e-18 95.9 79 59.5
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 3.0e-18 95.9 79 59.5
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 3.0e-18 95.9 79 59.5
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 3.0e-18 95.9 79 60.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 4.0e-18 95.5 75 66.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 4.0e-18 95.5 75 66.7
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 5.2e-18 95.1 79 67.1
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 6.8e-18 94.7 82 59.8
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 6.8e-18 94.7 79 65.8
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 8.8e-18 94.4 79 65.8
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 8.8e-18 94.4 82 61.0
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.2e-17 94.0 79 59.5
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.2e-17 94.0 79 59.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.2e-17 94.0 79 62.0
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 2.6e-17 92.8 79 60.8
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.6e-17 92.8 82 61.0
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 3.4e-17 92.4 79 62.0
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 3.4e-17 92.4 79 63.3
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.7e-17 91.7 79 59.5
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 7.5e-17 91.3 79 58.2
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 9.8e-17 90.9 81 56.8
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.7e-16 89.0 82 58.5
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.3e-16 87.8 79 62.0
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 8.3e-16 87.8 82 58.5
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 8.3e-16 87.8 79 58.2
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.8e-15 86.7 79 62.0
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 2.4e-15 86.3 75 53.3
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 3.1e-15 85.9 79 62.0
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 9.1e-15 84.3 82 54.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 1.6e-14 83.6 62 66.1
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 2.0e-14 83.2 79 59.5
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.7e-14 82.8 58 70.7
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.3e-13 80.5 72 56.9
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 1.7e-13 80.1 84 52.4
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 2.2e-13 79.7 57 70.2
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.8e-13 79.0 82 46.3
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 7.2e-12 74.7 62 67.7
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 9.5e-12 74.3 79 49.4
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.1e-11 73.2 48 77.1
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.2e-09 67.4 79 50.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.6e-09 66.2 79 45.6
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 9.8e-09 64.3 44 68.2
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-08 63.9 48 66.7
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.2e-08 63.2 48 66.7
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.8e-08 62.8 41 78.0
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.9e-08 62.0 79 43.0
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.1e-07 60.8 79 39.2
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.4e-07 60.5 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.4e-07 60.5 79 39.2
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.8e-07 60.1 44 65.9
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.8e-07 60.1 75 42.7
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 9.2e-07 57.8 82 40.2
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.2e-06 57.4 39 69.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.7e-06 54.7 32 78.1
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 7.7e-06 54.7 72 45.8


User provided reference genes

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