Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 1.8e-90 335.9 168 100.0
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 2.0e-41 172.9 199 54.3
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 3.8e-40 168.7 199 54.3
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 2.5e-39 166.0 199 52.3
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.5e-39 166.0 199 52.3
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 3.2e-39 165.6 141 61.7
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 5.5e-39 164.9 139 61.2
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.2e-38 163.7 139 60.4
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 1.6e-38 163.3 139 61.2
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 1.6e-38 163.3 199 51.3
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.1e-38 162.9 199 51.3
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 4.7e-38 161.8 139 60.4
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 1.0e-37 160.6 139 59.0
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 2.3e-37 159.5 142 58.5
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 3.0e-37 159.1 139 59.0
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 5.2e-37 158.3 199 49.2
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 8.8e-37 157.5 139 60.4
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 8.8e-37 157.5 139 60.4
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 8.8e-37 157.5 139 60.4
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 8.8e-37 157.5 139 60.4
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.5e-36 156.8 199 50.8
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 2.0e-36 156.4 199 48.2
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 3.3e-36 155.6 199 48.2
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 4.4e-36 155.2 199 47.7
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 5.7e-36 154.8 141 61.0
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 5.7e-36 154.8 141 61.0
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 9.7e-36 154.1 199 47.7
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 9.7e-36 154.1 199 50.3
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 1.3e-35 153.7 139 59.0
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.3e-35 153.7 141 58.2
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 1.7e-35 153.3 199 49.2
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 1.7e-35 153.3 139 59.0
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 2.2e-35 152.9 139 59.0
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 2.8e-35 152.5 139 59.0
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 2.8e-35 152.5 199 48.7
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 3.7e-35 152.1 139 59.7
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 4.8e-35 151.8 200 49.5
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 4.8e-35 151.8 199 47.7
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 8.2e-35 151.0 139 59.7
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 8.2e-35 151.0 141 57.4
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 2.4e-34 149.4 199 48.2
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 4.1e-34 148.7 199 47.2
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 4.1e-34 148.7 198 48.5
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 4.1e-34 148.7 198 48.5
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 5.3e-34 148.3 199 46.2
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 7.0e-34 147.9 139 58.3
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 7.0e-34 147.9 199 48.2
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 9.1e-34 147.5 199 47.7
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 9.1e-34 147.5 199 46.7
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 1.6e-33 146.7 139 55.4
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 1.6e-33 146.7 139 57.6
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 2.7e-33 146.0 139 56.8
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 2.7e-33 146.0 199 47.7
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 3.5e-33 145.6 199 44.7
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 4.5e-33 145.2 199 47.2
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 5.9e-33 144.8 141 56.0
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 5.9e-33 144.8 199 44.7
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 5.9e-33 144.8 199 44.7
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 7.7e-33 144.4 139 56.8
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 1.0e-32 144.1 139 56.1
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 1.7e-32 143.3 141 57.4
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 1.7e-32 143.3 180 47.8
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 1.7e-32 143.3 141 52.5
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 2.2e-32 142.9 199 47.2
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 2.9e-32 142.5 139 55.4
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 2.9e-32 142.5 143 53.8
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 3.8e-32 142.1 141 51.8
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 3.8e-32 142.1 199 47.7
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 5.0e-32 141.7 199 47.2
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 5.0e-32 141.7 139 56.8
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 5.0e-32 141.7 199 45.7
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 8.5e-32 141.0 199 45.2
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 1.1e-31 140.6 200 47.5
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 1.9e-31 139.8 141 51.1
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 2.5e-31 139.4 141 53.9
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 2.5e-31 139.4 141 53.2
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 3.2e-31 139.0 140 54.3
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 7.2e-31 137.9 199 46.2
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 1.2e-30 137.1 141 50.4
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 1.6e-30 136.7 197 43.7
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 2.1e-30 136.3 199 46.2
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 2.7e-30 136.0 139 53.2
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 3.6e-30 135.6 199 43.2
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 4.7e-30 135.2 139 53.2
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 6.1e-30 134.8 139 53.2
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 6.1e-30 134.8 199 45.2
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 8.0e-30 134.4 141 52.5
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 1.0e-29 134.0 199 44.7
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 1.0e-29 134.0 199 45.2
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.8e-29 133.3 174 49.4
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.0e-29 132.5 199 44.2
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 8.8e-29 131.0 199 44.7
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 1.5e-28 130.2 139 54.0
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 9.8e-28 127.5 141 51.1
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 2.4e-26 122.9 198 40.4
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 3.8e-16 89.0 60 73.3
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 3.6e-14 82.4 168 36.9
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 2.9e-11 72.8 91 45.1
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 4.6e-09 65.5 45 68.9
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 4.6e-09 65.5 45 68.9
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 5.9e-09 65.1 61 55.7
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 5.0e-08 62.0 88 46.6
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 2.5e-07 59.7 140 35.0
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 3.3e-07 59.3 118 37.3
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 4.3e-07 58.9 88 43.2


User provided reference genes

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