Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 2009.2 1010 100.0
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1906.7 1010 95.0
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1752.6 981 88.5
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1709.9 1010 85.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1699.5 1010 84.2
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1696.8 1016 83.7
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1691.0 1010 83.8
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1678.3 992 84.3
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1673.7 992 84.2
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1628.6 1011 78.9
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1581.2 1011 77.6
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1556.6 1015 76.9
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1553.1 1010 76.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1550.8 1013 75.9
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1539.6 1077 73.0
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1531.9 1013 75.4
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1526.1 1012 74.5
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1493.4 1015 73.6
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1486.5 1014 73.4
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1476.5 1013 72.8
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1475.7 1013 73.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1469.9 1010 71.6
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1467.2 1014 72.2
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1459.1 1012 71.8
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1457.2 987 72.8
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1437.9 1013 70.1
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1435.6 1001 72.1
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1435.6 1019 71.1
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1431.0 1016 70.7
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1427.9 1019 70.7
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1424.1 1012 69.9
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1424.1 1075 67.6
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1418.7 1015 70.0
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1418.7 1014 70.1
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1416.0 1015 69.9
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1412.5 1006 70.1
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1412.1 1015 69.1
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1411.4 1014 70.1
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1410.2 1015 69.9
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1409.0 1014 69.1
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1407.1 1014 69.0
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1390.6 1015 69.2
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1390.6 1014 68.9
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1382.5 1062 66.0
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1377.1 1012 67.8
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1376.3 1015 67.6
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1372.8 993 69.2
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1360.9 1015 68.2
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1353.2 1020 67.3
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1348.2 1017 66.6
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1347.0 1033 66.2
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1343.6 1014 66.7
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1339.7 1017 66.9
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1339.7 1015 67.2
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1337.8 1016 66.1
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1330.5 1013 64.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1327.0 1015 66.1
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1008 66.3
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1318.5 1017 65.6
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1314.3 1016 65.5
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1314.3 1016 65.5
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1311.6 1015 65.2
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1310.0 1015 64.9
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1308.9 1016 65.1
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1308.9 1013 65.4
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 1015 65.0
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 1015 65.0
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1298.1 1011 65.5
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1292.7 1026 63.7
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1290.0 1013 63.9
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1283.5 1014 65.1
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1282.3 1013 63.6
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1280.8 1009 64.8
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1280.8 1008 65.4
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1280.4 1013 63.5
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1276.9 1018 64.6
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1276.5 1017 62.2
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1241.5 1011 61.4
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1226.5 779 77.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1207.6 1011 61.3
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1184.5 984 62.3
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1175.2 779 75.2
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1155.6 796 71.7
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1139.0 1014 57.9
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 0.0e+00 1097.0 1016 56.2
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1087.0 1020 56.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 8.7e-297 1023.8 695 72.7
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 4.9e-284 981.5 754 65.0
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 5.4e-283 978.0 594 79.5
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.2e-279 964.5 973 53.5
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 6.4e-276 954.5 610 75.1
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-257 894.0 1033 47.0
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 5.3e-254 881.7 1035 46.6
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.9e-251 873.2 774 56.8
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.9e-244 849.4 876 50.7
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.4e-238 830.5 996 46.5
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.6e-226 790.4 1006 46.1
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.2e-213 747.7 544 68.4
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 6.6e-212 741.9 504 70.8
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 5.8e-208 728.8 560 66.2
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 2.0e-200 703.7 433 79.2
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 7.1e-198 695.3 453 76.4
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.3e-188 664.5 1056 39.6
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 3.1e-185 653.3 418 78.0
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.5e-184 651.0 572 60.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 7.1e-182 642.1 1030 39.3
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.3e-180 637.9 528 63.1
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 6.0e-173 612.5 512 60.5
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.0e-159 568.5 459 60.6
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.3e-155 553.1 512 56.4
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 9.6e-155 552.0 631 50.1
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 2.1e-154 550.8 1021 34.4
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.4e-129 468.4 426 58.0
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.9e-120 436.4 296 69.6
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 2.2e-119 434.5 531 46.9
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 3.8e-119 433.7 1070 29.8
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.6e-115 421.0 237 86.5
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.5e-110 404.4 275 75.3
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.0e-104 384.8 237 80.2
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 5.4e-81 307.0 333 49.8
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.7e-80 304.7 316 50.6
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 3.9e-79 300.8 456 40.1
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.5e-78 298.1 317 50.8
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-63 249.6 390 43.3
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-57 229.2 363 39.7
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 6.0e-56 223.8 363 39.7
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 7.1e-49 200.3 109 89.0
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.1e-48 198.7 756 26.7
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-47 196.1 397 36.3
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.5e-46 191.8 163 62.6
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.5e-46 191.8 163 62.6
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 4.3e-46 191.0 815 26.3
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 7.4e-46 190.3 393 35.4
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-41 176.0 245 44.5
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-41 174.5 312 38.1
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.8e-39 169.1 751 24.8
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-38 166.0 419 31.3
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.0e-31 143.3 159 50.9
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.1e-30 139.8 114 64.9
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 3.7e-29 134.8 198 41.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 2.4e-28 132.1 119 62.2
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.1e-25 123.2 76 80.3
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 3.2e-25 121.7 335 28.4
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.9e-24 117.1 92 60.9
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 8.8e-23 113.6 163 41.7
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 1.5e-19 102.8 89 57.3
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.7e-18 99.4 213 32.9
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 8.5e-18 97.1 436 23.2
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.9e-17 95.9 61 78.7
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 5.7e-14 84.3 65 61.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 1.7e-13 82.8 48 81.2
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 3.7e-13 81.6 95 46.3
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 7.0e-12 77.4 109 38.5
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.3e-10 73.2 61 62.3
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 2.3e-07 62.4 68 42.6
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 8.8e-07 60.5 105 42.9


User provided reference genes

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