Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 2.4e-170 602.1 300 100.0
MD03G1049700 Malus domestica HOM05D016692 ORTHO05D010482 3.3e-103 379.0 240 80.8
Prupe.6G039500 Prunus persica HOM05D016692 ORTHO05D010482 1.5e-92 343.6 240 71.7
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 2.2e-70 270.0 242 58.3
RcHm_v2.0_Chr5g0073561 Rosa chinensis HOM05D016692 ORTHO05D010482 1.1e-69 267.7 240 56.7
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 1.8e-69 266.9 242 57.4
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 3.1e-69 266.2 242 57.4
FAN25G0531 Fragaria x ananassa HOM05D000033 ORTHO05D000913 1.0e-67 261.2 242 56.6
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 6.2e-25 119.0 197 30.5
FAN16G0804 Fragaria x ananassa HOM05D016692 ORTHO05D010482 1.4e-24 117.9 101 52.5
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 3.4e-23 113.2 234 31.6
TPR.G13887 Trifolium pratense HOM05D008517 ORTHO05D010482 7.6e-23 112.1 231 29.0
Ca_15071_v3 Cicer arietinum L. HOM05D008517 ORTHO05D010482 3.8e-22 109.8 229 30.1
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 4.9e-22 109.4 218 33.5
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 8.4e-22 108.6 197 31.5
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 9.3e-21 105.1 196 29.6
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 1.7e-19 100.9 248 28.6
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 3.9e-19 99.8 191 30.4
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 7.3e-18 95.5 235 29.8
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 9.6e-18 95.1 235 28.5
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 1.3e-17 94.7 235 28.5
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 1.6e-17 94.4 206 32.0
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 2.1e-17 94.0 235 28.1
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 2.1e-17 94.0 235 28.1
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 2.1e-17 94.0 235 28.1
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 2.1e-17 94.0 200 29.5
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 2.8e-17 93.6 197 29.9
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 6.2e-17 92.4 236 26.3
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 1.1e-16 91.7 236 26.3
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 1.8e-16 90.9 197 28.9
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 3.1e-16 90.1 159 31.4
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 5.3e-16 89.4 236 27.1
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 1.2e-15 88.2 246 26.8
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 2.0e-15 87.4 226 25.7
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 2.6e-15 87.0 200 29.5
Glyma.18G051200 Glycine max HOM05D008517 ORTHO05D010482 3.4e-15 86.7 161 31.1
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 7.6e-15 85.5 246 28.0
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 4.9e-14 82.8 192 28.6
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 1.1e-13 81.6 201 30.3
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 2.1e-12 77.4 239 26.8
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 6.0e-12 75.9 246 26.8
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 7.9e-12 75.5 191 27.2
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 1.3e-11 74.7 240 26.2
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 1.3e-11 74.7 200 27.0
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 8.7e-11 72.0 218 25.7
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 5.6e-10 69.3 241 26.1
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 1.3e-09 68.2 158 27.8
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.3e-09 68.2 218 25.2
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.8e-09 67.0 226 26.1
HanXRQChr06g0182401 Helianthus annuus HOM05D008517 ORTHO05D010482 1.8e-08 64.3 189 26.5
Lsat_1_v5_gn_8_99661 Lactuca sativa HOM05D008517 ORTHO05D010482 3.1e-08 63.5 176 30.7
TAR383G0516 Trochodendron aralioides HOM05D002137 ORTHO05D002144 6.9e-08 62.4 208 25.0
Sopen08g018700 Solanum pennellii HOM05D002137 ORTHO05D002144 1.3e-06 58.2 221 22.6
RcHm_v2.0_Chr2g0143331 Rosa chinensis HOM05D002137 ORTHO05D002144 2.2e-06 57.4 248 26.6
PGSC0003DMG400029948 Solanum tuberosum HOM05D002137 ORTHO05D002144 2.2e-06 57.4 221 22.2
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 3.8e-06 56.6 156 24.4
Solyc08g065140.1 Solanum lycopersicum HOM05D002137 ORTHO05D002144 6.4e-06 55.8 221 22.2


User provided reference genes

Program Settings