Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1050200 Malus domestica HOM05D003312 ORTHO05D003792 3.3e-30 134.4 70 100.0
MD03G1036800 Malus domestica HOM05D003312 ORTHO05D003792 4.1e-28 127.5 69 95.7
MD11G1038000 Malus domestica HOM05D003312 ORTHO05D003792 1.3e-26 122.5 69 91.3
MD08G1197900 Malus domestica HOM05D003312 ORTHO05D003792 1.7e-26 122.1 69 92.8
MD11G1187300 Malus domestica HOM05D003312 ORTHO05D003792 5.0e-26 120.6 69 88.4
Prupe.6G028800 Prunus persica HOM05D003312 ORTHO05D003792 6.1e-24 113.6 69 88.4
FAN21G3408 Fragaria x ananassa HOM05D003312 ORTHO05D003792 4.1e-20 100.9 70 80.0
FvH4_3g42200 Fragaria vesca HOM05D003312 ORTHO05D003792 2.6e-19 98.2 70 78.6
FAN16G1887 Fragaria x ananassa HOM05D003312 ORTHO05D003792 2.6e-19 98.2 70 78.6
FAN11G2578 Fragaria x ananassa HOM05D003312 ORTHO05D003792 5.9e-19 97.1 71 78.9
FAN25G3360 Fragaria x ananassa HOM05D003312 ORTHO05D003792 5.9e-19 97.1 69 72.5
ClCG09G021560 Citrullus lanatus HOM05D003312 ORTHO05D003792 6.5e-18 93.6 70 72.9
CANSAT11G0443 Cannabis sativa HOM05D003312 ORTHO05D003792 1.1e-17 92.8 69 71.0
RcHm_v2.0_Chr5g0075471 Rosa chinensis HOM05D003312 ORTHO05D003792 1.4e-17 92.4 71 76.1
Haze_09872 Corylus avellana HOM05D003312 ORTHO05D003792 1.6e-16 89.0 69 71.0
CsaV3_7G021580 Cucumis sativus L. HOM05D003312 ORTHO05D003792 1.6e-16 89.0 70 68.6
CiPaw.11G207300 Carya illinoinensis HOM05D003312 ORTHO05D003792 2.1e-16 88.6 69 69.6
Cfa021896 Carpinus fangiana HOM05D003312 ORTHO05D003792 3.6e-16 87.8 69 69.6
MELO3C013189.2 Cucumis melo HOM05D003312 ORTHO05D003792 4.7e-16 87.4 71 66.2
Ciclev10009371m.g Citrus clementina HOM05D003312 ORTHO05D003792 3.9e-15 84.3 72 63.9
Manes.01G003900 Manihot esculenta HOM05D003312 ORTHO05D003792 3.9e-15 84.3 69 66.7
Sed0026837 Sechium edule HOM05D003312 ORTHO05D003792 8.8e-15 83.2 72 66.7
MD17G1169900 Malus domestica HOM05D003312 ORTHO05D003792 1.5e-14 82.4 69 69.6
VMungo0540G1073 Vigna mungo HOM05D003312 ORTHO05D003792 2.6e-14 81.6 62 75.8
QL08p002630 Quercus lobata HOM05D003312 ORTHO05D003792 9.7e-14 79.7 71 64.8
Thecc.07G007400 Theobroma cacao HOM05D003312 ORTHO05D003792 1.7e-13 79.0 62 69.4
AT4G26550 Arabidopsis thaliana HOM05D003312 ORTHO05D003792 2.2e-13 78.6 66 65.2
Carub.0007s1433 Capsella rubella HOM05D003312 ORTHO05D003792 2.8e-13 78.2 66 63.6
Thhalv10026146m.g Eutrema salsugineum HOM05D003312 ORTHO05D003792 2.8e-13 78.2 73 60.3
COL.COLO4_07745 Corchorus olitorius HOM05D003312 ORTHO05D003792 4.8e-13 77.4 62 67.7
Phvul.006G059278 Phaseolus vulgaris HOM05D003312 ORTHO05D003792 6.3e-13 77.0 62 69.4
EL10Ac4g07520 Beta vulgaris HOM05D003312 ORTHO05D003792 1.4e-12 75.9 69 60.9
CARHR234130 Cardamine hirsuta HOM05D003312 ORTHO05D003792 1.4e-12 75.9 69 62.3
BcaNung02404 Brassica carinata HOM05D003312 ORTHO05D003792 2.4e-12 75.1 68 63.2
Nn1g07580 Nelumbo nucifera HOM05D003312 ORTHO05D003792 2.4e-12 75.1 69 60.9
Aa31LG5G11900 Aethionema arabicum HOM05D003312 ORTHO05D003792 4.1e-12 74.3 69 60.9
Sp7g24500 Schrenkiella parvula HOM05D003312 ORTHO05D003792 4.1e-12 74.3 69 60.9
Ca_06417_v3 Cicer arietinum L. HOM05D003312 ORTHO05D003792 7.0e-12 73.6 63 65.1
Gohir.A01G094100 Gossypium hirsutum HOM05D003312 ORTHO05D003792 9.1e-12 73.2 62 59.7
GSVIVG01014749001 Vitis vinifera HOM05D003312 ORTHO05D003792 1.2e-11 72.8 75 65.3
arahy.Tifrunner.gnm1.ann1.2I8AHJ Arachis hypogaea HOM05D003312 ORTHO05D003792 2.0e-11 72.0 62 69.4
arahy.Tifrunner.gnm1.ann1.RD29H5 Arachis hypogaea HOM05D003312 ORTHO05D003792 2.0e-11 72.0 62 69.4
Duzib213G0891 Durio zibethinus HOM05D003312 ORTHO05D003792 2.0e-11 72.0 62 61.3
AL8G31600 Arabidopsis lyrata HOM05D003312 ORTHO05D003792 2.6e-11 71.6 74 58.1
BraA03t14745Z Brassica rapa HOM05D003312 ORTHO05D003792 2.6e-11 71.6 72 59.7
Duzib170G0535 Durio zibethinus HOM05D003312 ORTHO05D003792 3.5e-11 71.2 62 61.3
Gohir.D05G385200 Gossypium hirsutum HOM05D003312 ORTHO05D003792 3.5e-11 71.2 62 64.5
THA.LOC104813458 Tarenaya hassleriana HOM05D003312 ORTHO05D003792 3.5e-11 71.2 65 58.5
AT5G56020 Arabidopsis thaliana HOM05D003312 ORTHO05D003792 4.5e-11 70.9 74 58.1
A03p56770 Brassica napus HOM05D003312 ORTHO05D003792 4.5e-11 70.9 73 60.3
BolC7t45985H Brassica oleracea HOM05D003312 ORTHO05D003792 4.5e-11 70.9 74 58.1
Cc00_g19680 Coffea canephora HOM05D003312 ORTHO05D003792 4.5e-11 70.9 70 62.9
Oeu029985.1 Olea europaea HOM05D003312 ORTHO05D003792 4.5e-11 70.9 69 62.3
vmacro11618 Vaccinium macrocarpon HOM05D003312 ORTHO05D003792 4.5e-11 70.9 70 61.4
THA.LOC104811684 Tarenaya hassleriana HOM05D003312 ORTHO05D003792 5.9e-11 70.5 62 61.3
BcaC09g50648 Brassica carinata HOM05D003312 ORTHO05D003792 7.7e-11 70.1 67 59.7
A01p17800 Brassica napus HOM05D003312 ORTHO05D003792 7.7e-11 70.1 67 59.7
C01p22520 Brassica napus HOM05D003312 ORTHO05D003792 7.7e-11 70.1 67 59.7
BolC1t02185H Brassica oleracea HOM05D003312 ORTHO05D003792 7.7e-11 70.1 67 59.7
CAN.G623.38 Capsicum annuum HOM05D003312 ORTHO05D003792 7.7e-11 70.1 72 63.9
Gohir.D01G078600 Gossypium hirsutum HOM05D003312 ORTHO05D003792 7.7e-11 70.1 62 56.5
Gorai.002G103200 Gossypium raimondii HOM05D003312 ORTHO05D003792 7.7e-11 70.1 62 56.5
Lj6g0007142 Lotus japonicus HOM05D003312 ORTHO05D003792 7.7e-11 70.1 62 71.0
TPR.G17955 Trifolium pratense HOM05D003312 ORTHO05D003792 7.7e-11 70.1 62 64.5
TAR627G0882 Trochodendron aralioides HOM05D003312 ORTHO05D003792 7.7e-11 70.1 69 58.0
CSS0011481 Camellia sinensis var. sinensis HOM05D003312 ORTHO05D003792 1.0e-10 69.7 68 58.8
CSS0047974 Camellia sinensis var. sinensis HOM05D003312 ORTHO05D003792 1.0e-10 69.7 68 58.8
Ca_14837_v3 Cicer arietinum L. HOM05D003312 ORTHO05D003792 1.0e-10 69.7 62 66.1
Gorai.009G451900 Gossypium raimondii HOM05D003312 ORTHO05D003792 1.0e-10 69.7 62 62.9
Nn1g07724 Nelumbo nucifera HOM05D003312 ORTHO05D003792 1.0e-10 69.7 69 56.5
Sc03g0011640 Simmondsia chinensis HOM05D003312 ORTHO05D003792 1.0e-10 69.7 68 63.2
Dinv21325 Davidia involucrata HOM05D003312 ORTHO05D003792 1.3e-10 69.3 70 54.3
ECA234G2961 Erigeron canadensis HOM05D003312 ORTHO05D003792 1.7e-10 68.9 68 61.8
HPP92_015741 Vanilla planifolia HOM05D003312 ORTHO05D003792 1.7e-10 68.9 62 59.7
TPR.G1246 Trifolium pratense HOM05D003312 ORTHO05D003792 2.2e-10 68.6 66 66.7
TWI38G0433 Tripterygium wilfordii HOM05D003312 ORTHO05D003792 2.2e-10 68.6 70 55.7
AUR62017155 Chenopodium quinoa HOM05D003312 ORTHO05D003792 2.9e-10 68.2 71 62.0
Manes.13G059700 Manihot esculenta HOM05D003312 ORTHO05D003792 2.9e-10 68.2 72 52.8
Medtr3g060850 Medicago truncatula HOM05D003312 ORTHO05D003792 2.9e-10 68.2 62 67.7
Solyc12g006250.3 Solanum lycopersicum HOM05D003312 ORTHO05D003792 2.9e-10 68.2 69 60.9
Sopen12g002200 Solanum pennellii HOM05D003312 ORTHO05D003792 2.9e-10 68.2 69 60.9
CDE05G1407 Ceratophyllum demersum HOM05D003312 ORTHO05D003792 3.8e-10 67.8 69 55.1
Glyma.18G073700 Glycine max HOM05D003312 ORTHO05D003792 3.8e-10 67.8 62 64.5
Lj1C895G6 Lonicera japonica HOM05D003312 ORTHO05D003792 3.8e-10 67.8 68 58.8
Oeu000678.1 Olea europaea HOM05D003312 ORTHO05D003792 3.8e-10 67.8 69 58.0
Potri.011G164900 Populus trichocarpa HOM05D003312 ORTHO05D003792 3.8e-10 67.8 66 62.1
AL7G26350 Arabidopsis lyrata HOM05D003312 ORTHO05D003792 5.0e-10 67.4 67 61.2
Carub.0008s1636 Capsella rubella HOM05D003312 ORTHO05D003792 5.0e-10 67.4 72 52.8
Gohir.A04G004700 Gossypium hirsutum HOM05D003312 ORTHO05D003792 5.0e-10 67.4 62 61.3
PSO210G7240 Papaver somniferum HOM05D003312 ORTHO05D003792 5.0e-10 67.4 64 59.4
ATR0751G094 Amborella trichopoda HOM05D003312 ORTHO05D003792 6.5e-10 67.0 77 53.2
Dinv10365 Davidia involucrata HOM05D003312 ORTHO05D003792 6.5e-10 67.0 65 61.5
Lalb_Chr15g0082341 Lupinus albus HOM05D003312 ORTHO05D003792 6.5e-10 67.0 46 78.3
CDE05G2208 Ceratophyllum demersum HOM05D003312 ORTHO05D003792 8.5e-10 66.6 69 55.1
Glyma.08G333100 Glycine max HOM05D003312 ORTHO05D003792 8.5e-10 66.6 62 62.9
TWI36G0185 Tripterygium wilfordii HOM05D003312 ORTHO05D003792 1.1e-09 66.2 69 56.5
TWI75G0794 Tripterygium wilfordii HOM05D003312 ORTHO05D003792 1.1e-09 66.2 69 55.1
Ah.08g214140 Amaranthus hybridus HOM05D003312 ORTHO05D003792 1.5e-09 65.9 79 54.4
Aqoxy4G02305 Aquilegia oxysepala HOM05D003312 ORTHO05D003792 1.5e-09 65.9 72 52.8
Duzib138G1599 Durio zibethinus HOM05D003312 ORTHO05D003792 1.5e-09 65.9 70 54.3
PGSC0003DMG400028831 Solanum tuberosum HOM05D003312 ORTHO05D003792 1.5e-09 65.9 69 58.0
SGA_v2.0_scaffold168G38577 Striga asiatica HOM05D003312 ORTHO05D003792 1.5e-09 65.9 74 56.8
Cpa.g.sc136.60 Carica papaya HOM05D003312 ORTHO05D003792 1.9e-09 65.5 70 54.3
AUR62035650 Chenopodium quinoa HOM05D003312 ORTHO05D003792 1.9e-09 65.5 73 58.9
Migut.M01625 Erythranthe guttata HOM05D003312 ORTHO05D003792 1.9e-09 65.5 68 61.8
Os06g0300300 Oryza sativa ssp. japonica HOM05D003312 ORTHO05D003792 1.9e-09 65.5 69 58.0
TWI39G1114 Tripterygium wilfordii HOM05D003312 ORTHO05D003792 1.9e-09 65.5 71 53.5
Actinidia20606 Actinidia chinensis HOM05D003312 ORTHO05D003792 2.5e-09 65.1 71 56.3
PGR044G2404 Punica granatum HOM05D003312 ORTHO05D003792 2.5e-09 65.1 69 56.5
SalBow8G0426 Salvia bowleyana HOM05D003312 ORTHO05D003792 2.5e-09 65.1 68 60.3
Aa31LG3G11920 Aethionema arabicum HOM05D003312 ORTHO05D003792 3.2e-09 64.7 66 53.0
Lj8C138G6 Lonicera japonica HOM05D003312 ORTHO05D003792 3.2e-09 64.7 71 57.7
Rhsim06G0179300 Rhododendron simsii HOM05D003312 ORTHO05D003792 3.2e-09 64.7 69 52.2
Atru.chr2.3776 Acer truncatum HOM05D003312 ORTHO05D003792 4.2e-09 64.3 78 55.1
PSO210G5899 Papaver somniferum HOM05D003312 ORTHO05D003792 4.2e-09 64.3 64 57.8
Potri.001G467200 Populus trichocarpa HOM05D003312 ORTHO05D003792 4.2e-09 64.3 66 60.6
Sabra14G0130100 Salix brachista HOM05D003312 ORTHO05D003792 4.2e-09 64.3 70 55.7
GSVIVG01030130001 Vitis vinifera HOM05D003312 ORTHO05D003792 4.2e-09 64.3 69 53.6
CAN.G1500.9 Capsicum annuum HOM05D003312 ORTHO05D003792 7.2e-09 63.5 69 58.0
Duzib133G0323 Durio zibethinus HOM05D003312 ORTHO05D003792 7.2e-09 63.5 71 52.1
Psat5g167120 Pisum sativum HOM05D003312 ORTHO05D003792 7.2e-09 63.5 62 58.1
Solyc07g065850.3 Solanum lycopersicum HOM05D003312 ORTHO05D003792 7.2e-09 63.5 71 56.3
arahy.Tifrunner.gnm1.ann1.864J84 Arachis hypogaea HOM05D003312 ORTHO05D003792 9.4e-09 63.2 67 61.2
arahy.Tifrunner.gnm1.ann1.GSB50Y Arachis hypogaea HOM05D003312 ORTHO05D003792 9.4e-09 63.2 67 61.2
PSO675G3318 Papaver somniferum HOM05D003312 ORTHO05D003792 9.4e-09 63.2 69 49.3
unitig_21.g20269 Utricularia gibba HOM05D003312 ORTHO05D003792 9.4e-09 63.2 65 53.8
HPP92_020502 Vanilla planifolia HOM05D003312 ORTHO05D003792 9.4e-09 63.2 69 50.7
CSS0006595 Camellia sinensis var. sinensis HOM05D003312 ORTHO05D003792 1.2e-08 62.8 74 51.4
CSS0023673 Camellia sinensis var. sinensis HOM05D003312 ORTHO05D003792 1.2e-08 62.8 74 51.4
PGSC0003DMG400022265 Solanum tuberosum HOM05D003312 ORTHO05D003792 1.6e-08 62.4 46 73.9
HanXRQChr10g0309271 Helianthus annuus HOM05D003312 ORTHO05D003792 2.1e-08 62.0 67 55.2
Lsat_1_v5_gn_5_80660 Lactuca sativa HOM05D003312 ORTHO05D003792 2.1e-08 62.0 72 56.9
MBI14_g02348_MAGBIO Magnolia biondii HOM05D003312 ORTHO05D003792 2.1e-08 62.0 59 59.3
Thecc.01G200000 Theobroma cacao HOM05D003312 ORTHO05D003792 2.1e-08 62.0 71 50.7
Zm00001eb110460 Zea mays HOM05D003312 ORTHO05D003792 2.1e-08 62.0 68 54.4
C07p55290 Brassica napus HOM05D003312 ORTHO05D003792 2.7e-08 61.6 72 54.2
Hund23026 Selenicereus undatus HOM05D003312 ORTHO05D003792 2.7e-08 61.6 69 52.2
COL.COLO4_19663 Corchorus olitorius HOM05D003312 ORTHO05D003792 3.6e-08 61.2 71 49.3
ECA236G1189 Erigeron canadensis HOM05D003312 ORTHO05D003792 3.6e-08 61.2 71 50.7
Nitab4.5_0000152g0310 Nicotiana tabacum HOM05D003312 ORTHO05D003792 3.6e-08 61.2 46 71.7
Nitab4.5_0003130g0040 Nicotiana tabacum HOM05D003312 ORTHO05D003792 3.6e-08 61.2 46 71.7
Potri.014G170700 Populus trichocarpa HOM05D003312 ORTHO05D003792 3.6e-08 61.2 72 52.8
PSO541G0557 Papaver somniferum HOM05D003312 ORTHO05D003792 4.7e-08 60.8 69 47.8
LjContig00081g0026382 Lotus japonicus HOM05D003312 ORTHO05D003792 6.1e-08 60.5 68 58.8
Nitab4.5_0003208g0070 Nicotiana tabacum HOM05D003312 ORTHO05D003792 6.1e-08 60.5 69 55.1
Zm00001eb386650 Zea mays HOM05D003312 ORTHO05D003792 6.1e-08 60.5 64 56.2
Medtr5g096470 Medicago truncatula HOM05D003312 ORTHO05D003792 8.0e-08 60.1 43 69.8
Peaxi162Scf00047g02223 Petunia axillaris HOM05D003312 ORTHO05D003792 8.0e-08 60.1 69 56.5
Gohir.A07G162900 Gossypium hirsutum HOM05D003312 ORTHO05D003792 1.0e-07 59.7 70 54.3
Gohir.D07G170000 Gossypium hirsutum HOM05D003312 ORTHO05D003792 1.0e-07 59.7 70 54.3
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.0e-07 59.7 68 48.5
Atru.chr6.3434 Acer truncatum HOM05D003312 ORTHO05D003792 1.4e-07 59.3 71 57.7
Ciclev10016561m.g Citrus clementina HOM05D003312 ORTHO05D003792 1.4e-07 59.3 70 52.9
Psat2g006400 Pisum sativum HOM05D003312 ORTHO05D003792 1.4e-07 59.3 43 67.4
Gorai.001G189900 Gossypium raimondii HOM05D003312 ORTHO05D003792 1.8e-07 58.9 70 52.9
Nitab4.5_0001229g0030 Nicotiana tabacum HOM05D003312 ORTHO05D003792 1.8e-07 58.9 69 53.6
vmacro12059 Vaccinium macrocarpon HOM05D003312 ORTHO05D003792 1.8e-07 58.9 73 50.7
Actinidia30374 Actinidia chinensis HOM05D003312 ORTHO05D003792 2.3e-07 58.5 43 76.7
Migut.H01278 Erythranthe guttata HOM05D003312 ORTHO05D003792 3.0e-07 58.2 69 52.2
Dinv40887 Davidia involucrata HOM05D003312 ORTHO05D003792 4.0e-07 57.8 62 51.6
Rhsim06G0233000 Rhododendron simsii HOM05D003312 ORTHO05D003792 1.5e-06 55.8 71 50.7
MBI15_g19872_MAGBIO Magnolia biondii HOM05D003312 ORTHO05D003792 2.0e-06 55.5 70 47.1
HanXRQChr11g0329511 Helianthus annuus HOM05D003312 ORTHO05D003792 5.7e-06 53.9 70 50.0
Rhsim06G0232800 Rhododendron simsii HOM05D003312 ORTHO05D003792 5.7e-06 53.9 72 48.6


User provided reference genes

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