Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 0.0e+00 1433.7 748 100.0
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 0.0e+00 1169.5 750 84.9
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 2.4e-304 1048.5 755 76.3
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 3.7e-220 768.8 766 62.4
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.4e-219 766.9 770 61.0
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.3e-217 760.4 772 60.8
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 9.5e-216 754.2 769 60.1
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.4e-211 739.6 771 59.9
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.1e-203 714.1 754 59.5
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 2.2e-188 663.3 769 55.0
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 6.4e-172 608.6 775 52.5
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.9e-171 607.1 744 50.8
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 1.6e-167 594.0 754 52.4
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 2.1e-167 593.6 739 51.4
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.9e-164 583.2 768 49.3
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 2.1e-162 577.0 770 51.0
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 2.4e-158 563.5 760 50.1
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.3e-151 538.9 826 44.6
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.8e-150 537.3 760 48.2
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 5.9e-149 532.3 773 46.6
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 2.9e-148 530.0 758 47.8
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 2.5e-147 526.9 767 46.5
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.6e-146 524.2 775 46.5
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.6e-146 524.2 781 46.6
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.6e-146 523.1 745 47.7
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 3.9e-145 519.6 767 47.1
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.5e-144 516.9 755 47.9
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 2.4e-142 510.4 761 46.3
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 4.1e-142 509.6 769 47.3
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 5.3e-142 509.2 792 46.0
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.9e-139 500.7 769 46.8
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.1e-138 497.3 790 46.7
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 2.0e-136 490.7 795 43.6
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 4.8e-135 486.1 837 43.7
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 1.1e-134 485.0 789 45.9
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.7e-132 477.6 901 39.7
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 7.2e-131 472.2 746 45.3
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 3.0e-129 466.8 752 44.5
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 3.0e-129 466.8 749 44.2
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 3.7e-127 459.9 749 43.7
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 3.1e-126 456.8 757 44.9
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 5.3e-126 456.1 765 45.0
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 7.0e-126 455.7 795 43.9
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 3.5e-125 453.4 795 43.8
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.1e-123 448.4 749 42.7
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.9e-123 447.6 776 42.5
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.2e-122 444.9 924 36.6
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.2e-119 434.1 777 43.4
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 4.5e-117 426.4 769 41.0
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.8e-113 414.5 731 41.9
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 5.2e-113 412.9 719 41.4
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 3.5e-109 400.2 764 40.3
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.0e-104 384.4 763 38.8
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 2.0e-104 384.4 764 39.5
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 2.8e-103 380.6 769 38.2
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 5.4e-102 376.3 768 38.9
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.9e-100 370.5 769 38.4
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 3.3e-99 367.1 769 38.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 3.6e-98 363.6 759 41.1
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 3.6e-98 363.6 757 38.4
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 6.1e-98 362.8 750 38.8
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 1.5e-96 358.2 730 37.8
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 9.8e-96 355.5 772 38.1
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.7e-95 354.8 775 38.8
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 2.9e-95 354.0 788 37.1
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 6.4e-95 352.8 741 38.6
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.1e-94 352.1 776 37.4
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.8e-94 351.3 774 37.3
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 5.4e-94 349.7 754 37.9
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 3.5e-93 347.1 776 36.9
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.3e-92 345.1 771 36.8
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.7e-92 344.7 787 37.4
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 4.3e-91 340.1 740 38.8
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 5.6e-91 339.7 755 37.5
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 6.2e-90 336.3 768 36.8
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 1.1e-89 335.5 738 40.2
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 3.4e-88 330.5 761 37.7
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 5.8e-88 329.7 745 36.8
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.7e-87 328.2 792 36.4
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.2e-87 327.8 743 37.3
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 2.9e-87 327.4 788 37.9
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 7.8e-85 319.3 766 36.3
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.1e-83 315.5 721 37.4
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.8e-81 308.1 741 37.1
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 5.2e-81 306.6 767 34.7
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 2.6e-80 304.3 812 35.5
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 5.8e-80 303.1 786 38.9
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.7e-79 301.6 761 36.0
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 1.7e-79 301.6 765 35.2
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 2.2e-79 301.2 794 38.4
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 5.4e-78 296.6 745 36.9
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 5.4e-78 296.6 788 37.7
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 4.6e-77 293.5 794 37.7
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 7.8e-77 292.7 754 34.9
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 3.3e-75 287.3 703 36.4
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 4.3e-75 287.0 800 36.5
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 5.6e-75 286.6 806 36.7
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 4.0e-73 280.4 754 33.7
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.7e-71 275.0 725 34.5
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.6e-69 268.5 774 34.6
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 3.6e-66 257.3 796 35.6
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 3.6e-66 257.3 796 35.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 4.7e-66 256.9 786 30.9
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 3.4e-64 250.8 709 34.4
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 7.6e-64 249.6 798 35.2
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 7.6e-64 249.6 798 35.2
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 7.6e-64 249.6 761 33.0
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 9.9e-64 249.2 715 33.8
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 1.7e-63 248.4 779 34.9
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 2.4e-62 244.6 751 32.1
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 4.2e-62 243.8 721 35.0
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 5.4e-62 243.4 784 35.2
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 9.3e-62 242.7 801 34.2
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.2e-61 242.3 699 33.6
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 7.8e-61 239.6 782 35.4
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 7.8e-61 239.6 764 33.5
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.9e-60 237.3 787 35.2
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 3.9e-60 237.3 788 35.7
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.6e-56 224.6 779 30.0
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 1.6e-53 215.3 718 32.5
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 3.9e-52 210.7 717 31.2
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 2.0e-48 198.4 173 60.1
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 1.3e-47 195.7 299 47.5
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 7.1e-38 163.3 123 61.8
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 1.2e-37 162.5 673 29.0
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.3e-36 159.1 773 29.1
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 1.1e-33 149.4 709 26.4
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 2.4e-33 148.3 580 31.7
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 6.5e-23 113.6 837 26.0
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 4.5e-16 90.9 220 28.2
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 7.7e-16 90.1 826 23.5
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.0e-15 89.7 771 23.9
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 4.2e-14 84.3 819 23.2
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 8.0e-13 80.1 96 46.9
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 5.0e-07 60.8 95 37.9


User provided reference genes

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