Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1043600 Malus domestica HOM05D000173 ORTHO05D005736 2.7e-126 455.3 225 100.0
MD11G1045700 Malus domestica HOM05D000173 ORTHO05D005736 3.0e-64 249.2 351 45.6
MD03G1042500 Malus domestica HOM05D000173 ORTHO05D005736 4.8e-62 241.9 351 44.7
FvH4_3g41660 Fragaria vesca HOM05D000173 ORTHO05D005736 3.1e-61 239.2 349 44.1
FAN25G2199 Fragaria x ananassa HOM05D000173 ORTHO05D005736 2.6e-60 236.1 349 43.8
Thecc.07G002000 Theobroma cacao HOM05D000173 ORTHO05D005736 1.2e-57 227.3 352 42.0
FAN16G3599 Fragaria x ananassa HOM05D000173 ORTHO05D005736 1.9e-55 219.9 372 40.6
RcHm_v2.0_Chr5g0074751 Rosa chinensis HOM05D000173 ORTHO05D005736 3.3e-55 219.2 342 43.0
Cfa016956 Carpinus fangiana HOM05D000173 ORTHO05D005736 5.6e-55 218.4 352 39.8
Ciclev10008155m.g Citrus clementina HOM05D000173 ORTHO05D005736 2.1e-54 216.5 359 39.6
Gohir.D13G132100 Gossypium hirsutum HOM05D000173 ORTHO05D005736 1.1e-53 214.2 351 39.6
Gorai.013G148100 Gossypium raimondii HOM05D000173 ORTHO05D005736 1.1e-53 214.2 351 39.6
FAN11G3973 Fragaria x ananassa HOM05D000173 ORTHO05D005736 1.4e-53 213.8 232 54.3
TPR.G16712 Trifolium pratense HOM05D000173 ORTHO05D005736 1.8e-53 213.4 350 38.9
QL08p000620 Quercus lobata HOM05D000173 ORTHO05D005736 3.1e-53 212.6 351 40.5
FAN21G0887 Fragaria x ananassa HOM05D000173 ORTHO05D005736 4.0e-53 212.2 389 39.1
CANSAT11G1741 Cannabis sativa HOM05D000173 ORTHO05D005736 1.5e-52 210.3 362 39.2
Phvul.005G003800 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 1.5e-52 210.3 349 39.3
VMungo1080G0826 Vigna mungo HOM05D000173 ORTHO05D005736 1.5e-52 210.3 349 39.8
arahy.Tifrunner.gnm1.ann1.1AZN13 Arachis hypogaea HOM05D000173 ORTHO05D005736 2.6e-52 209.5 349 40.1
Medtr3g010170 Medicago truncatula HOM05D000173 ORTHO05D005736 3.4e-52 209.1 350 39.1
Gohir.A13G128700 Gossypium hirsutum HOM05D000173 ORTHO05D005736 5.8e-52 208.4 351 39.0
Potri.001G471700 Populus trichocarpa HOM05D000173 ORTHO05D005736 7.6e-52 208.0 354 39.3
Lj3g0003303 Lotus japonicus HOM05D000173 ORTHO05D005736 1.3e-51 207.2 349 38.7
Psat5g231680 Pisum sativum HOM05D000173 ORTHO05D005736 1.7e-51 206.8 350 38.6
THA.LOC104811699 Tarenaya hassleriana HOM05D000173 ORTHO05D005736 1.7e-51 206.8 352 38.1
arahy.Tifrunner.gnm1.ann1.YXC3CU Arachis hypogaea HOM05D000173 ORTHO05D005736 3.8e-51 205.7 349 39.8
CsaV3_3G004340 Cucumis sativus L. HOM05D000173 ORTHO05D005736 3.8e-51 205.7 351 39.3
Duzib268G0641 Durio zibethinus HOM05D000173 ORTHO05D005736 4.9e-51 205.3 351 39.9
Ca_14141_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 6.4e-51 204.9 350 39.1
MD00G1070700 Malus domestica HOM05D000173 ORTHO05D005736 8.4e-51 204.5 399 38.6
MELO3C014127.2 Cucumis melo HOM05D000173 ORTHO05D005736 1.1e-50 204.1 352 38.6
PGR083G1684 Punica granatum HOM05D000173 ORTHO05D005736 1.2e-49 200.7 351 39.6
SGA_v2.0_scaffold7G03547 Striga asiatica HOM05D000173 ORTHO05D005736 1.6e-49 200.3 324 40.7
ClCG10G004520 Citrullus lanatus HOM05D000173 ORTHO05D005736 6.0e-49 198.4 363 38.3
Lalb_Chr04g0259451 Lupinus albus HOM05D000173 ORTHO05D005736 7.9e-49 198.0 353 38.5
Glyma.16G096700 Glycine max HOM05D000173 ORTHO05D005736 1.0e-48 197.6 347 38.9
CSS0004771 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005736 1.8e-48 196.8 351 38.5
CSS0020852 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005736 1.8e-48 196.8 351 38.5
Sed0017311 Sechium edule HOM05D000173 ORTHO05D005736 1.8e-48 196.8 351 39.0
Lalb_Chr09g0334651 Lupinus albus HOM05D000173 ORTHO05D005736 2.3e-48 196.4 349 38.4
Rhsim04G0007300 Rhododendron simsii HOM05D000173 ORTHO05D005736 3.0e-48 196.1 351 38.2
Thhalv10013450m.g Eutrema salsugineum HOM05D000173 ORTHO05D005736 5.1e-48 195.3 352 38.1
Potri.001G471400 Populus trichocarpa HOM05D000173 ORTHO05D005736 1.9e-47 193.4 351 38.5
arahy.Tifrunner.gnm1.ann1.9SE8JW Arachis hypogaea HOM05D000173 ORTHO05D005736 2.5e-47 193.0 349 36.7
Sp6g18030 Schrenkiella parvula HOM05D000173 ORTHO05D005736 2.5e-47 193.0 352 37.2
Eucgr.F01992 Eucalyptus grandis HOM05D000173 ORTHO05D005736 3.3e-47 192.6 349 37.2
AL8G31810 Arabidopsis lyrata HOM05D000173 ORTHO05D005736 4.3e-47 192.2 352 37.8
TWI39G0957 Tripterygium wilfordii HOM05D000173 ORTHO05D005736 4.3e-47 192.2 349 38.4
Atru.chr2.3890 Acer truncatum HOM05D000173 ORTHO05D005736 5.6e-47 191.8 346 38.2
Medtr8g070520 Medicago truncatula HOM05D000173 ORTHO05D005736 5.6e-47 191.8 348 36.8
arahy.Tifrunner.gnm1.ann1.D2KAQB Arachis hypogaea HOM05D000173 ORTHO05D005736 7.4e-47 191.4 349 36.4
BraA02t05994Z Brassica rapa HOM05D000173 ORTHO05D005736 1.3e-46 190.7 349 37.0
Ca_22541_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 3.7e-46 189.1 233 47.6
Cpa.g.sc12.72 Carica papaya HOM05D000173 ORTHO05D005736 6.2e-46 188.3 348 37.9
Phvul.003G274900 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 8.1e-46 188.0 348 36.8
TAR626G0284 Trochodendron aralioides HOM05D000173 ORTHO05D005736 1.1e-45 187.6 351 37.6
A02p09320 Brassica napus HOM05D000173 ORTHO05D005736 1.4e-45 187.2 356 36.0
Carub.0008s1650 Capsella rubella HOM05D000173 ORTHO05D005736 2.4e-45 186.4 351 36.2
HanXRQChr11g0346941 Helianthus annuus HOM05D000173 ORTHO05D005736 4.0e-45 185.7 351 35.0
Lj4g0017123 Lotus japonicus HOM05D000173 ORTHO05D005736 4.0e-45 185.7 348 36.8
Sabra16G0320200 Salix brachista HOM05D000173 ORTHO05D005736 5.3e-45 185.3 234 47.0
C02p15450 Brassica napus HOM05D000173 ORTHO05D005736 6.9e-45 184.9 356 35.7
BolC2t07659H Brassica oleracea HOM05D000173 ORTHO05D005736 6.9e-45 184.9 356 35.7
Aqoxy4G02260 Aquilegia oxysepala HOM05D000173 ORTHO05D005736 1.2e-44 184.1 346 37.6
MBI15_g26862_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D005736 1.2e-44 184.1 346 37.3
Peaxi162Scf00232g00532 Petunia axillaris HOM05D000173 ORTHO05D005736 2.0e-44 183.3 351 35.9
Sopen07g034300 Solanum pennellii HOM05D000173 ORTHO05D005736 2.0e-44 183.3 351 36.2
Hma1.2p1_0321F.1_g124320 Hydrangea macrophylla HOM05D000173 ORTHO05D005736 4.5e-44 182.2 351 36.8
Solyc07g066120.3 Solanum lycopersicum HOM05D000173 ORTHO05D005736 4.5e-44 182.2 351 36.2
BcaB08g35985 Brassica carinata HOM05D000173 ORTHO05D005736 5.8e-44 181.8 352 36.4
Migut.M01585 Erythranthe guttata HOM05D000173 ORTHO05D005736 5.8e-44 181.8 351 36.2
Nn1g07638 Nelumbo nucifera HOM05D000173 ORTHO05D005736 7.6e-44 181.4 388 35.6
TPR.G6164 Trifolium pratense HOM05D000173 ORTHO05D005736 7.6e-44 181.4 348 36.2
PGSC0003DMG400022148 Solanum tuberosum HOM05D000173 ORTHO05D005736 1.0e-43 181.0 351 35.9
GSVIVG01014840001 Vitis vinifera HOM05D000173 ORTHO05D005736 4.9e-43 178.7 350 36.6
HanXRQChr08g0232901 Helianthus annuus HOM05D000173 ORTHO05D005736 6.5e-43 178.3 350 34.9
ECA236G0787 Erigeron canadensis HOM05D000173 ORTHO05D005736 8.4e-43 177.9 351 33.6
Nitab4.5_0008062g0010 Nicotiana tabacum HOM05D000173 ORTHO05D005736 1.4e-42 177.2 363 35.3
VMungo0251G2140 Vigna mungo HOM05D000173 ORTHO05D005736 1.4e-42 177.2 252 41.7
CDE03G0171 Ceratophyllum demersum HOM05D000173 ORTHO05D005736 2.5e-42 176.4 344 34.9
Lsat_1_v5_gn_5_540 Lactuca sativa HOM05D000173 ORTHO05D005736 5.5e-42 175.3 352 34.4
Cc05_g15670 Coffea canephora HOM05D000173 ORTHO05D005736 1.2e-41 174.1 351 35.9
HanXRQChr11g0335511 Helianthus annuus HOM05D000173 ORTHO05D005736 7.9e-41 171.4 351 34.2
Sabra16G0320000 Salix brachista HOM05D000173 ORTHO05D005736 1.8e-40 170.2 380 35.0
AT5G56180 Arabidopsis thaliana HOM05D000173 ORTHO05D005736 3.0e-40 169.5 235 44.3
PSO541G2314 Papaver somniferum HOM05D000173 ORTHO05D005736 3.0e-40 169.5 346 35.8
BolC9t57593H Brassica oleracea HOM05D000173 ORTHO05D005736 3.9e-40 169.1 361 34.6
Glyma.04G112600 Glycine max HOM05D000173 ORTHO05D005736 8.7e-40 167.9 326 37.7
unitig_8.g4598 Utricularia gibba HOM05D000173 ORTHO05D005736 1.9e-39 166.8 352 34.1
PSO675G5735 Papaver somniferum HOM05D000173 ORTHO05D005736 2.5e-39 166.4 346 35.5
HPP92_015174 Vanilla planifolia HOM05D000173 ORTHO05D005736 1.3e-38 164.1 348 34.8
ECA246G0903 Erigeron canadensis HOM05D000173 ORTHO05D005736 4.8e-38 162.2 346 34.1
MD11G1045300 Malus domestica HOM05D000173 ORTHO05D005736 4.8e-38 162.2 247 45.3
MSTRG.7039 Avicennia marina HOM05D000173 ORTHO05D005736 2.4e-37 159.8 328 35.1
Oeu005538.1 Olea europaea HOM05D000173 ORTHO05D005736 1.5e-36 157.1 327 35.5
ATR0751G083 Amborella trichopoda HOM05D000173 ORTHO05D005736 2.0e-36 156.8 344 34.0
Lsat_1_v5_gn_9_88501 Lactuca sativa HOM05D000173 ORTHO05D005736 2.6e-36 156.4 353 32.3
Sc10g0008190 Simmondsia chinensis HOM05D000173 ORTHO05D005736 4.5e-36 155.6 348 34.2
BcaC04g20131 Brassica carinata HOM05D000173 ORTHO05D005736 5.9e-36 155.2 237 41.4
Actinidia20424 Actinidia chinensis HOM05D000173 ORTHO05D005736 1.0e-35 154.5 217 44.2
AUR62035629 Chenopodium quinoa HOM05D000173 ORTHO05D005736 1.0e-35 154.5 227 41.0
Dinv19646 Davidia involucrata HOM05D000173 ORTHO05D005736 1.3e-35 154.1 232 43.5
SalBow8G1092 Salvia bowleyana HOM05D000173 ORTHO05D005736 1.7e-35 153.7 326 34.4
CAN.G623.72 Capsicum annuum HOM05D000173 ORTHO05D005736 3.8e-35 152.5 234 41.0
AUR62017175 Chenopodium quinoa HOM05D000173 ORTHO05D005736 5.0e-35 152.1 294 35.7
MD11G1044700 Malus domestica HOM05D000173 ORTHO05D005736 1.4e-34 150.6 169 56.2
Lj1A900G25 Lonicera japonica HOM05D000173 ORTHO05D005736 2.5e-34 149.8 331 33.2
Prupe.6G034100 Prunus persica HOM05D000173 ORTHO05D005736 1.2e-33 147.5 205 47.8
C09p47390 Brassica napus HOM05D000173 ORTHO05D005736 2.1e-33 146.7 237 40.9
Ah.06g184110 Amaranthus hybridus HOM05D000173 ORTHO05D005736 3.5e-33 146.0 328 33.5
Lj8C183T9 Lonicera japonica HOM05D000173 ORTHO05D005736 3.0e-32 142.9 278 38.1
Haze_09913 Corylus avellana HOM05D000173 ORTHO05D005736 6.7e-32 141.7 241 36.5
Manes.05G204900 Manihot esculenta HOM05D000173 ORTHO05D005736 6.7e-32 141.7 190 47.4
Zm00001eb066950 Zea mays HOM05D000173 ORTHO05D005736 2.8e-30 136.3 228 37.7
Nitab4.5_0000152g0070 Nicotiana tabacum HOM05D000173 ORTHO05D005736 6.9e-29 131.7 260 36.2
Dinv40911 Davidia involucrata HOM05D000173 ORTHO05D005736 1.5e-28 130.6 190 45.3
Actinidia03673 Actinidia chinensis HOM05D000173 ORTHO05D005736 2.6e-28 129.8 215 41.9
SMO119G0010 Selaginella moellendorffii HOM05D000173 ORTHO05D005736 2.6e-28 129.8 225 36.4
CARHR269580 Cardamine hirsuta HOM05D000173 ORTHO05D005736 1.1e-26 124.4 190 42.6
vmacro09801 Vaccinium macrocarpon HOM05D000173 ORTHO05D005736 6.1e-25 118.6 254 35.4
COL.COLO4_07785 Corchorus olitorius HOM05D000173 ORTHO05D005736 1.4e-24 117.5 73 82.2
PSO782G1015 Papaver somniferum HOM05D000173 ORTHO05D005736 2.3e-24 116.7 328 30.5
Psat4g111560 Pisum sativum HOM05D000173 ORTHO05D005736 2.3e-24 116.7 188 41.5
Mapoly0120s0035 Marchantia polymorpha HOM05D000173 ORTHO05D005736 5.1e-24 115.5 230 35.2
Aa31LG3G12090 Aethionema arabicum HOM05D000173 ORTHO05D005736 4.1e-21 105.9 73 74.0
DCAR_017608 Daucus carota HOM05D000173 ORTHO05D005736 4.1e-21 105.9 73 74.0
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 9.1e-21 104.8 86 67.4
HanXRQChr15g0488001 Helianthus annuus HOM05D000173 ORTHO05D005736 7.7e-20 101.7 64 65.6
Lsat_1_v5_gn_7_115441 Lactuca sativa HOM05D000173 ORTHO05D005736 1.0e-19 101.3 74 67.6
Sopen12g023940 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-19 101.3 246 30.9
BcaB08g35984 Brassica carinata HOM05D000173 ORTHO05D005736 1.3e-19 100.9 325 28.9
CARHR269560 Cardamine hirsuta HOM05D000173 ORTHO05D005736 1.3e-19 100.9 64 70.3
DCAR_017607 Daucus carota HOM05D000173 ORTHO05D005736 1.9e-18 97.1 64 67.2
SEGI_17334 Sequoiadendron giganteum HOM05D000173 ORTHO05D005736 4.2e-18 95.9 188 36.7
BcaC04g20133 Brassica carinata HOM05D000173 ORTHO05D005736 5.5e-18 95.5 60 66.7
BolC9t57596H Brassica oleracea HOM05D000173 ORTHO05D005736 5.5e-18 95.5 60 66.7
CAN.G337.84 Capsicum annuum HOM05D000173 ORTHO05D005736 2.7e-17 93.2 177 37.9
CAN.G337.85 Capsicum annuum HOM05D000173 ORTHO05D005736 1.8e-16 90.5 64 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4947 Anthoceros agrestis HOM05D000173 ORTHO05D005736 3.3e-15 86.3 86 53.5
SEGI_10538 Sequoiadendron giganteum HOM05D000173 ORTHO05D005736 7.4e-15 85.1 58 63.8
MD11G1044100 Malus domestica HOM05D000173 ORTHO05D005736 2.6e-12 76.6 39 92.3
CBR_g3117 Chara braunii HOM05D000173 ORTHO05D005736 1.1e-10 71.2 252 24.6
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 2.1e-09 67.0 47 68.1
Lsat_1_v5_gn_4_7280 Lactuca sativa HOM05D000173 ORTHO05D005736 1.4e-08 64.3 40 62.5
Lsat_1_v5_gn_9_56940 Lactuca sativa HOM05D001670 ORTHO05D005736 1.8e-08 63.9 38 65.8
Ca_14080_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 2.3e-08 63.5 35 74.3
MD11G1044600 Malus domestica HOM05D000173 ORTHO05D245086 3.7e-06 56.2 26 92.3
Os04g0667700 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D005736 4.8e-06 55.8 37 64.9


User provided reference genes

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