Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 4.1e-298 1027.3 529 100.0
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 1.2e-268 929.5 529 89.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 2.5e-226 788.9 542 76.2
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 9.3e-226 786.9 544 75.9
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.3e-222 776.5 557 74.0
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 6.3e-222 774.2 512 77.1
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.1e-221 773.5 513 75.6
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 2.7e-217 758.8 513 75.6
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 5.1e-216 754.6 527 74.2
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.7e-211 739.6 532 71.8
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-210 736.9 515 73.2
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-209 733.4 542 72.5
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 3.0e-208 728.8 513 71.9
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.0e-208 728.8 513 72.9
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 4.4e-207 724.9 587 65.1
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 5.7e-207 724.5 527 70.6
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 2.2e-206 722.6 524 69.8
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 8.2e-206 720.7 519 70.9
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.1e-205 720.3 537 68.9
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.8e-205 719.5 530 70.4
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.6e-204 715.7 528 69.9
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 4.5e-204 714.9 516 70.2
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.0e-203 713.8 513 70.2
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.3e-203 713.4 513 69.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 8.5e-203 710.7 580 67.2
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 8.5e-203 710.7 519 68.2
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.1e-202 710.3 529 69.6
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.2e-201 706.8 514 70.4
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.6e-201 706.4 519 68.0
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.1e-201 706.1 529 69.2
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 7.9e-201 704.1 519 68.0
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.4e-200 703.4 513 68.6
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 3.9e-200 701.8 513 68.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.1e-199 700.3 496 71.0
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 4.4e-199 698.4 529 67.1
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 9.7e-199 697.2 513 67.1
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 6.3e-198 694.5 513 69.2
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.1e-197 693.7 513 69.0
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.8e-197 693.0 513 67.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.2e-196 690.3 512 68.8
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.2e-195 686.0 516 68.6
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.9e-194 682.9 529 67.1
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 5.5e-194 681.4 529 66.7
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 5.5e-194 681.4 517 68.3
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.2e-193 680.2 533 66.0
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.2e-193 680.2 509 68.2
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 6.7e-192 674.5 533 66.8
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 8.8e-192 674.1 515 68.2
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 2.6e-191 672.5 521 66.2
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.3e-191 672.2 518 67.2
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 4.4e-191 671.8 533 66.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 8.2e-190 667.5 512 67.2
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 8.2e-190 667.5 512 66.8
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.8e-189 666.4 510 67.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 5.3e-189 664.8 509 65.8
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 7.7e-188 661.0 516 64.9
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.7e-187 659.8 495 68.9
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 2.9e-187 659.1 526 63.5
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 3.8e-187 658.7 509 65.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 4.2e-186 655.2 511 65.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.7e-185 652.5 496 68.8
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 4.7e-185 651.7 472 70.6
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 6.8e-184 647.9 525 65.7
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 5.7e-183 644.8 526 65.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.4e-181 640.2 471 70.1
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.4e-181 639.4 443 72.7
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.8e-179 632.1 459 72.1
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 4.0e-176 622.1 616 55.4
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.4e-175 619.0 509 62.5
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.7e-174 616.7 509 63.7
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.2e-174 616.3 526 62.2
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 8.3e-174 614.4 443 69.5
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.0e-172 609.8 475 66.3
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 2.3e-171 606.3 506 62.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.4e-168 597.0 551 57.2
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 2.4e-165 586.3 453 68.4
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.2e-165 585.9 480 64.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.1e-162 577.4 437 70.3
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.6e-162 575.1 511 62.0
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 2.1e-161 573.2 509 58.3
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.0e-157 558.1 419 68.7
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.2e-156 557.4 490 61.4
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 2.7e-156 556.2 423 68.1
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.5e-156 555.8 453 66.0
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.5e-154 550.4 412 68.9
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-153 546.6 423 65.7
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.1e-152 542.7 423 64.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 5.8e-151 538.5 582 53.1
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.1e-149 534.3 515 54.8
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.1e-148 530.0 520 55.8
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 3.0e-147 526.2 507 57.2
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.5e-146 523.9 572 52.6
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 7.3e-146 521.5 446 60.1
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.0e-139 501.1 386 68.7
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.8e-136 490.3 420 62.4
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 9.9e-135 484.6 478 57.1
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 7.8e-132 474.9 465 54.6
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 5.1e-131 472.2 478 55.4
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.2e-127 461.1 448 53.8
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.7e-124 449.9 393 61.6
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.1e-122 444.5 423 58.9
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.3e-121 441.0 392 61.0
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.4e-120 436.8 390 61.3
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.6e-116 424.1 515 46.6
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 2.4e-112 410.2 479 46.6
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.6e-108 397.5 291 69.1
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.1e-107 392.5 299 67.2
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 6.3e-105 385.6 333 61.9
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.1e-101 374.8 508 42.5
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.2e-87 328.2 323 57.0
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.0e-86 322.8 252 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.2e-85 320.1 444 42.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.6e-79 300.4 212 69.3
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.5e-77 292.7 381 48.3
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 4.0e-75 286.6 232 61.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.5e-66 255.8 189 66.7
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.8e-62 243.4 462 36.4
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 9.5e-61 238.8 184 67.9
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.6e-60 238.0 195 66.2
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 6.1e-60 236.1 429 37.5
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.4e-56 224.9 216 58.3
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 5.6e-53 213.0 653 28.6
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 2.3e-51 207.6 162 64.8
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.1e-48 198.7 198 53.5
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 9.2e-48 195.7 183 56.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.0e-38 165.6 464 30.6
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.9e-37 161.4 177 52.0
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 6.2e-36 156.4 160 55.0
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.2e-33 147.9 150 52.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 9.2e-32 142.5 97 74.2
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.7e-31 141.0 97 66.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.3e-30 138.7 154 50.0
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.3e-30 138.7 154 50.0
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.8e-28 131.0 97 60.8
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.5e-26 125.2 124 49.2
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 7.6e-26 122.9 98 69.4
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.3e-25 122.1 86 69.8
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.1e-24 119.0 78 64.1
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-24 118.6 112 63.4
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.2e-23 115.5 498 26.1
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 2.5e-21 107.8 92 63.0
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 3.3e-21 107.5 57 91.2
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.2e-16 90.9 64 70.3
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.2e-16 90.5 112 41.1
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 6.0e-15 86.7 80 57.5
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.7e-14 85.1 67 67.2
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.7e-14 82.8 242 32.2
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.1e-13 82.4 61 62.3
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.9e-13 81.6 63 68.3
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.9e-13 81.6 63 68.3
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.4e-09 66.2 54 64.8
Prupe.6G034900 Prunus persica HOM05D004498 ORTHO05D005300 1.4e-08 65.5 75 56.0
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.8e-06 58.5 217 30.9
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.0e-06 57.8 55 56.4


User provided reference genes

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