Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1033400 Malus domestica HOM05D002529 ORTHO05D002664 1.3e-52 209.5 115 100.0
MD03G1029600 Malus domestica HOM05D002529 ORTHO05D002664 1.1e-33 146.7 95 88.4
Prupe.6G025700 Prunus persica HOM05D002529 ORTHO05D002664 4.6e-29 131.3 95 78.9
RcHm_v2.0_Chr1g0334081 Rosa chinensis HOM05D002529 ORTHO05D002664 1.0e-23 113.6 89 73.0
FAN13G2107 Fragaria x ananassa HOM05D002529 ORTHO05D002664 6.5e-23 110.9 89 73.0
MD11G1033000 Malus domestica HOM05D002529 ORTHO05D002664 6.5e-23 110.9 57 94.7
Prupe.6G337800 Prunus persica HOM05D002529 ORTHO05D002664 6.5e-23 110.9 115 61.7
FAN08G0687 Fragaria x ananassa HOM05D002529 ORTHO05D002664 5.5e-22 107.8 89 71.9
RcHm_v2.0_Chr5g0076411 Rosa chinensis HOM05D002529 ORTHO05D002664 2.1e-21 105.9 89 71.9
FvH4_5g30310 Fragaria vesca HOM05D002529 ORTHO05D002664 6.7e-20 100.9 89 70.8
FAN18G2811 Fragaria x ananassa HOM05D002529 ORTHO05D002664 6.7e-20 100.9 89 70.8
MD04G1217800 Malus domestica HOM05D002529 ORTHO05D002664 1.1e-19 100.1 112 56.2
Dinv02599 Davidia involucrata HOM05D002529 ORTHO05D002664 5.7e-19 97.8 91 56.0
GSVIVG01021882001 Vitis vinifera HOM05D002529 ORTHO05D002664 7.4e-19 97.4 95 69.5
CiPaw.07G007900 Carya illinoinensis HOM05D002529 ORTHO05D002664 2.2e-18 95.9 93 57.0
QL08p059718 Quercus lobata HOM05D002529 ORTHO05D002664 6.3e-18 94.4 99 57.6
Lalb_Chr04g0264001 Lupinus albus HOM05D002529 ORTHO05D002664 1.8e-17 92.8 115 53.0
CiPaw.08G178400 Carya illinoinensis HOM05D002529 ORTHO05D002664 2.4e-17 92.4 95 55.8
Potri.005G047901 Populus trichocarpa HOM05D002529 ORTHO05D002664 4.1e-17 91.7 113 50.4
Sabra13G0034100 Salix brachista HOM05D004408 ORTHO05D005486 6.9e-17 90.9 116 54.3
Dinv05119 Davidia involucrata HOM05D002529 ORTHO05D002664 1.2e-16 90.1 94 60.6
Duzib128G1976 Durio zibethinus HOM05D002529 ORTHO05D002664 1.2e-16 90.1 93 54.8
Lj4g0005583 Lotus japonicus HOM05D002529 ORTHO05D002664 2.0e-16 89.4 95 57.9
Thecc.05G290400 Theobroma cacao HOM05D002529 ORTHO05D002664 2.0e-16 89.4 91 61.5
Glyma.13G169100 Glycine max HOM05D002529 ORTHO05D002664 5.9e-16 87.8 113 44.2
Manes.08G120700 Manihot esculenta HOM05D002529 ORTHO05D002664 5.9e-16 87.8 93 62.4
Dinv02597 Davidia involucrata HOM05D002529 ORTHO05D002664 1.0e-15 87.0 91 52.7
Gohir.A11G298500 Gossypium hirsutum HOM05D002529 ORTHO05D002664 1.0e-15 87.0 93 63.4
Potri.013G035000 Populus trichocarpa HOM05D002529 ORTHO05D002664 1.3e-15 86.7 94 56.4
Glyma.19G009300 Glycine max HOM05D002529 ORTHO05D002664 1.7e-15 86.3 114 43.0
Gohir.D11G313300 Gossypium hirsutum HOM05D002529 ORTHO05D002664 2.2e-15 85.9 93 58.1
Gorai.007G344500 Gossypium raimondii HOM05D002529 ORTHO05D002664 2.2e-15 85.9 93 60.2
Cpa.g.sc114.63 Carica papaya HOM05D002529 ORTHO05D002664 3.8e-15 85.1 98 54.1
Atru.chr2.663 Acer truncatum HOM05D002529 ORTHO05D002664 5.0e-15 84.7 102 55.9
VMungo1383G2706 Vigna mungo HOM05D002529 ORTHO05D002664 1.1e-14 83.6 92 51.1
Lj1g0004297 Lotus japonicus HOM05D002529 ORTHO05D002664 4.2e-14 81.6 94 48.9
RcHm_v2.0_Chr2g0125761 Rosa chinensis HOM05D002529 ORTHO05D002664 5.5e-14 81.3 69 65.2
Glyma.18G147100 Glycine max HOM05D002529 ORTHO05D002664 7.2e-14 80.9 92 53.3
TWI12G0397 Tripterygium wilfordii HOM05D002529 ORTHO05D002664 1.6e-13 79.7 58 67.2
Hma1.2p1_0083F.1_g042670 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 2.1e-13 79.3 94 57.4
MD12G1235100 Malus domestica HOM05D002529 ORTHO05D002664 3.6e-13 78.6 97 52.6
Eucgr.H04397 Eucalyptus grandis HOM05D002529 ORTHO05D002664 4.6e-13 78.2 112 49.1
Nn1g02343 Nelumbo nucifera HOM05D002529 ORTHO05D002664 4.6e-13 78.2 93 47.3
CAN.G134.40 Capsicum annuum HOM05D002529 ORTHO05D002664 6.1e-13 77.8 91 49.5
Cc06_g23700 Coffea canephora HOM05D002529 ORTHO05D002664 6.1e-13 77.8 113 47.8
Nitab4.5_0004903g0030 Nicotiana tabacum HOM05D002529 ORTHO05D002664 6.1e-13 77.8 90 51.1
Rhsim05G0150200 Rhododendron simsii HOM05D002529 ORTHO05D002664 7.9e-13 77.4 91 47.3
Ca_23953_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 1.0e-12 77.0 93 55.9
Ca_23959_v3 Cicer arietinum L. HOM05D002529 ORTHO05D002664 1.0e-12 77.0 93 55.9
Cfa007075 Carpinus fangiana HOM05D001516 ORTHO05D001357 1.4e-12 76.6 91 51.6
Nitab4.5_0002687g0060 Nicotiana tabacum HOM05D002529 ORTHO05D002664 1.8e-12 76.3 90 55.6
Nn5g28120 Nelumbo nucifera HOM05D002529 ORTHO05D002664 2.3e-12 75.9 113 40.7
CANSAT54G0996 Cannabis sativa HOM05D002529 ORTHO05D002664 3.0e-12 75.5 56 66.1
Medtr8g043450 Medicago truncatula HOM05D002529 ORTHO05D002664 3.0e-12 75.5 93 50.5
PGSC0003DMG400027508 Solanum tuberosum HOM05D002529 ORTHO05D002664 3.9e-12 75.1 113 43.4
MSTRG.26637 Avicennia marina HOM05D002529 ORTHO05D002664 5.1e-12 74.7 94 51.1
Migut.L01786 Erythranthe guttata HOM05D002529 ORTHO05D002664 1.5e-11 73.2 113 41.6
Psat2g156040 Pisum sativum HOM05D002529 ORTHO05D002664 1.5e-11 73.2 91 51.6
Phvul.003G288900 Phaseolus vulgaris HOM05D002529 ORTHO05D002664 2.0e-11 72.8 96 51.0
ClCG11G014280 Citrullus lanatus HOM05D002529 ORTHO05D002664 2.5e-11 72.4 90 53.3
Nitab4.5_0003586g0050 Nicotiana tabacum HOM05D002529 ORTHO05D002664 2.5e-11 72.4 90 47.8
Solyc01g096760.3 Solanum lycopersicum HOM05D002529 ORTHO05D002664 3.3e-11 72.0 113 41.6
Sopen01g040470 Solanum pennellii HOM05D002529 ORTHO05D002664 3.3e-11 72.0 113 41.6
TWI12G0415 Tripterygium wilfordii HOM05D000460 ORTHO05D000333 3.3e-11 72.0 53 66.0
VMungo0251G2818 Vigna mungo HOM05D002529 ORTHO05D002664 5.7e-11 71.2 94 47.9
MSTRG.5850 Avicennia marina HOM05D002529 ORTHO05D002664 9.7e-11 70.5 113 41.6
Oeu006310.1 Olea europaea HOM05D002529 ORTHO05D002664 9.7e-11 70.5 106 46.2
Hund06996 Selenicereus undatus HOM05D002529 ORTHO05D002664 9.7e-11 70.5 105 49.5
CSS0013639 Camellia sinensis var. sinensis HOM05D002529 ORTHO05D002664 1.7e-10 69.7 91 49.5
Ciclev10002511m.g Citrus clementina HOM05D002529 ORTHO05D002664 1.7e-10 69.7 94 45.7
vmacro19828 Vaccinium macrocarpon HOM05D002529 ORTHO05D002664 2.2e-10 69.3 93 53.8
MELO3C003557.2 Cucumis melo HOM05D002529 ORTHO05D002664 2.8e-10 68.9 56 58.9
Sed0025735 Sechium edule HOM05D002529 ORTHO05D002664 4.8e-10 68.2 58 58.6
Actinidia33839 Actinidia chinensis HOM05D002529 ORTHO05D002664 6.3e-10 67.8 98 41.8
CsaV3_3G047670 Cucumis sativus L. HOM05D002529 ORTHO05D002664 6.3e-10 67.8 53 62.3
TAR636G3415 Trochodendron aralioides HOM05D002529 ORTHO05D002664 8.2e-10 67.4 92 41.3
arahy.Tifrunner.gnm1.ann1.2EE7P6 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.1e-09 67.0 96 46.9
arahy.Tifrunner.gnm1.ann1.418MG4 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.1e-09 67.0 96 46.9
arahy.Tifrunner.gnm1.ann1.G3F6T9 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.1e-09 67.0 96 46.9
ClCG05G009860 Citrullus lanatus HOM05D002529 ORTHO05D002664 1.1e-09 67.0 82 47.6
arahy.Tifrunner.gnm1.ann1.2T97DK Arachis hypogaea HOM05D002529 ORTHO05D002664 1.4e-09 66.6 100 48.0
arahy.Tifrunner.gnm1.ann1.A0H8UL Arachis hypogaea HOM05D002529 ORTHO05D002664 1.4e-09 66.6 100 48.0
arahy.Tifrunner.gnm1.ann1.DGU1VQ Arachis hypogaea HOM05D002529 ORTHO05D002664 1.4e-09 66.6 100 49.0
arahy.Tifrunner.gnm1.ann1.EKEG73 Arachis hypogaea HOM05D002529 ORTHO05D002664 1.4e-09 66.6 100 48.0
Peaxi162Scf00220g00009 Petunia axillaris HOM05D002529 ORTHO05D002664 1.8e-09 66.2 83 47.0
Hma1.2p1_0654F.1_g196630 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 2.4e-09 65.9 89 44.9
AUR62000960 Chenopodium quinoa HOM05D002529 ORTHO05D002664 5.3e-09 64.7 90 43.3
DCAR_018312 Daucus carota HOM05D002529 ORTHO05D002664 6.9e-09 64.3 96 42.7
Lsat_1_v5_gn_1_56180 Lactuca sativa HOM05D002529 ORTHO05D002664 9.1e-09 63.9 85 47.1
Oeu021565.1 Olea europaea HOM05D002529 ORTHO05D002664 1.5e-08 63.2 89 47.2
COL.COLO4_15255 Corchorus olitorius HOM05D002529 ORTHO05D002664 2.6e-08 62.4 54 57.4
FAN09G2690 Fragaria x ananassa HOM05D002529 ORTHO05D002664 2.6e-08 62.4 59 61.0
PGR042G2960 Punica granatum HOM05D002529 ORTHO05D002664 2.6e-08 62.4 53 56.6
Migut.G00316 Erythranthe guttata HOM05D002529 ORTHO05D002664 3.4e-08 62.0 70 45.7
Sc09g0003730 Simmondsia chinensis HOM05D002529 ORTHO05D002664 3.4e-08 62.0 54 53.7
ECA238G0509 Erigeron canadensis HOM05D002529 ORTHO05D002664 4.5e-08 61.6 113 39.8
CARHR185680 Cardamine hirsuta HOM05D002529 ORTHO05D002664 5.9e-08 61.2 91 39.6
SGA_v2.0_scaffold31G12908 Striga asiatica HOM05D002529 ORTHO05D002664 7.7e-08 60.8 42 71.4
Oeu026809.1 Olea europaea HOM05D002529 ORTHO05D002664 1.0e-07 60.5 86 53.5
EL10Ac3g07204 Beta vulgaris HOM05D002529 ORTHO05D002664 1.3e-07 60.1 113 43.4
AUR62005008 Chenopodium quinoa HOM05D002529 ORTHO05D002664 1.3e-07 60.1 90 41.1
Lj1g0003097 Lotus japonicus HOM05D002529 ORTHO05D002664 1.3e-07 60.1 74 52.7
Sed0014372 Sechium edule HOM05D002529 ORTHO05D002664 1.7e-07 59.7 58 53.4
BcaB04g19649 Brassica carinata HOM05D002529 ORTHO05D002664 2.2e-07 59.3 93 43.0
HanXRQChr07g0200741 Helianthus annuus HOM05D002529 ORTHO05D002664 2.2e-07 59.3 41 70.7
Lsat_1_v5_gn_2_115920 Lactuca sativa HOM05D002529 ORTHO05D002664 3.8e-07 58.5 58 53.4
Nn6g34079 Nelumbo nucifera HOM05D002529 ORTHO05D002664 3.8e-07 58.5 53 54.7
Aqoxy2G03402 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 5.0e-07 58.2 44 61.4
Thhalv10004943m.g Eutrema salsugineum HOM05D002529 ORTHO05D002664 5.0e-07 58.2 90 42.2
SalBow3G3572 Salvia bowleyana HOM05D002529 ORTHO05D002664 5.0e-07 58.2 58 51.7
Aqoxy1G03767 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 6.5e-07 57.8 111 36.9
Migut.J01026 Erythranthe guttata HOM05D002529 ORTHO05D002664 6.5e-07 57.8 42 61.9
unitig_578.g16363 Utricularia gibba HOM05D000550 ORTHO05D000400 6.5e-07 57.8 84 44.0
HanXRQChr14g0457681 Helianthus annuus HOM05D002529 ORTHO05D002664 8.5e-07 57.4 41 68.3
Medtr1g035200 Medicago truncatula HOM05D002529 ORTHO05D002664 8.5e-07 57.4 50 58.0
Sp2g20320 Schrenkiella parvula HOM05D002529 ORTHO05D002664 8.5e-07 57.4 90 45.6
ATR0697G145 Amborella trichopoda HOM05D002529 ORTHO05D002664 1.1e-06 57.0 97 36.1
ATR0730G133 Amborella trichopoda HOM05D002529 ORTHO05D002664 1.1e-06 57.0 101 36.6
Aqoxy3G00616 Aquilegia oxysepala HOM05D002529 ORTHO05D002664 1.1e-06 57.0 84 41.7
Peaxi162Scf00220g00008 Petunia axillaris HOM05D002529 ORTHO05D002664 1.4e-06 56.6 89 46.1
THA.LOC104821691 Tarenaya hassleriana HOM05D002529 ORTHO05D002664 1.4e-06 56.6 55 47.3
TAR365G0359 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.9e-06 56.2 90 37.8
SEGI_19226 Sequoiadendron giganteum HOM05D002529 ORTHO05D002664 2.5e-06 55.8 58 43.1
Peaxi162Scf00071g00848 Petunia axillaris HOM05D002529 ORTHO05D002664 3.2e-06 55.5 86 45.3
PSO832G3905 Papaver somniferum HOM05D002529 ORTHO05D002664 4.2e-06 55.1 98 31.6
Carub.0006s2547 Capsella rubella HOM05D002529 ORTHO05D002664 5.5e-06 54.7 90 47.8
Os08g0508600 Oryza sativa ssp. japonica HOM05D002529 ORTHO05D002664 5.5e-06 54.7 55 47.3
ECA236G0123 Erigeron canadensis HOM05D002529 ORTHO05D002664 7.2e-06 54.3 41 63.4
PSO210G6081 Papaver somniferum HOM05D002529 ORTHO05D002664 7.2e-06 54.3 85 35.3
Hma1.2p1_0654F.1_g196660 Hydrangea macrophylla HOM05D002529 ORTHO05D002664 9.4e-06 53.9 44 56.8


User provided reference genes

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