Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.5e-134 483.0 272 100.0
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.3e-126 454.9 277 93.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 9.6e-126 453.8 277 92.8
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.6e-126 453.8 277 92.8
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.6e-125 453.0 277 92.1
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.1e-125 452.6 277 92.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 6.2e-125 451.1 277 92.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.4e-124 449.9 272 94.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 90.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 89.2
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 89.9
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 89.9
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.2e-122 442.6 277 89.5
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.2e-122 442.6 277 89.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.2e-122 442.6 277 88.8
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 4.9e-122 441.4 277 89.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 6.5e-122 441.0 277 88.4
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 8.4e-122 440.7 277 89.5
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 8.4e-122 440.7 274 89.1
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 88.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 89.9
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 3.2e-121 438.7 277 88.8
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.2e-121 438.7 277 88.4
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.2e-121 438.7 277 88.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 4.2e-121 438.3 277 88.4
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 4.2e-121 438.3 277 87.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 7.1e-121 437.6 277 88.8
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 9.3e-121 437.2 276 89.1
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.7
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-120 434.9 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.6e-120 434.9 277 88.1
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 4.6e-120 434.9 277 87.4
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 87.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 3.0e-119 432.2 277 86.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 3.0e-119 432.2 277 86.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 3.9e-119 431.8 277 86.3
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.1e-119 431.4 277 86.6
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.1e-119 431.4 277 86.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.7e-119 431.0 274 87.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 6.7e-119 431.0 277 87.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 8.7e-119 430.6 277 87.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.1e-118 430.3 277 86.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.5e-118 429.9 277 86.3
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.9e-118 429.5 277 86.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.3e-118 428.7 277 87.4
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 3.3e-118 428.7 277 86.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 7.4e-118 427.6 277 87.0
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 7.4e-118 427.6 276 87.3
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 9.6e-118 427.2 277 85.6
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 9.6e-118 427.2 277 85.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 9.6e-118 427.2 277 85.9
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-117 426.8 274 86.5
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.6e-117 426.4 276 86.2
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.1e-117 426.0 277 85.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 85.2
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 85.9
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.8e-117 424.9 274 86.1
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 8.2e-117 424.1 277 84.8
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 84.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 2.4e-116 422.5 275 85.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.1e-116 421.8 276 85.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.9e-116 421.0 277 84.5
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 6.9e-116 421.0 276 86.2
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 9.0e-116 420.6 277 84.8
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-115 419.9 301 80.1
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.4e-115 418.7 276 83.7
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 3.4e-115 418.7 275 86.2
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.5e-115 418.3 283 82.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 4.5e-115 418.3 261 89.7
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.2e-114 416.0 278 83.1
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 2.9e-114 415.6 275 84.7
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 2.9e-114 415.6 275 84.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.8e-114 415.2 278 83.5
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 6.5e-114 414.5 321 76.0
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.4e-113 413.3 275 84.0
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.6e-112 408.3 277 80.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.7e-111 404.1 261 85.4
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.3e-110 402.1 261 85.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-109 399.8 320 72.5
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.3e-109 397.9 318 73.3
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 8.2e-109 397.5 277 81.9
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.3e-108 394.8 299 72.6
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.9e-108 394.4 274 83.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.2e-107 393.7 254 87.4
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.6e-107 392.5 277 80.5
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 4.5e-107 391.7 271 79.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 7.7e-107 391.0 270 83.0
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.3e-106 390.2 278 78.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 6.5e-106 387.9 261 83.5
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 6.5e-106 387.9 275 78.5
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 8.5e-106 387.5 274 75.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-105 387.1 318 67.6
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-105 386.3 273 79.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.2e-104 383.6 278 78.4
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.7e-103 377.9 269 76.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.3e-102 375.2 256 81.6
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 7.4e-102 374.4 278 75.2
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.2e-101 372.9 273 76.9
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 8.2e-101 370.9 260 80.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.4e-100 369.4 262 77.9
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.1e-100 369.0 256 81.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 3.4e-99 365.5 281 75.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.5e-99 365.2 353 60.3
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.2e-98 362.8 229 88.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-97 358.6 331 67.1
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.1e-96 356.3 230 85.7
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.0e-94 349.7 266 73.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.3e-93 347.1 272 66.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 3.1e-92 342.4 222 87.4
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.6e-91 339.3 277 70.0
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 5.0e-90 335.1 222 85.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.2e-89 332.4 313 67.7
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.1e-88 329.7 248 75.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.1e-88 329.7 248 75.0
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.0e-87 327.4 281 67.3
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 8.8e-87 324.3 283 66.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 7.5e-86 321.2 224 83.9
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 8.2e-85 317.8 269 65.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-83 313.5 274 67.5
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-82 310.1 274 67.2
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 8.3e-69 264.6 257 59.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.4e-68 263.1 184 80.4
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.8e-66 255.8 287 53.3
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-63 247.3 288 52.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.7e-59 233.0 153 75.8
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.1e-56 223.4 180 75.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.2e-56 221.9 138 84.1
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.6e-54 216.5 144 88.9
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 7.0e-52 208.4 132 81.8
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.0e-50 203.0 129 81.4
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-48 197.2 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.3e-42 176.8 97 92.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.5e-41 173.3 106 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.1e-40 170.2 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.9e-36 157.1 84 95.2
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.1e-35 153.7 160 60.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-29 134.0 74 91.9
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.7e-29 134.0 74 91.9
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 6.4e-29 132.1 80 82.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.0e-26 124.8 73 82.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.6e-22 110.2 253 35.2
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 4.2e-20 102.8 158 45.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 7.1e-20 102.1 158 44.3
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.3e-18 97.8 181 37.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 5.1e-18 95.9 123 51.2
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.9e-17 94.0 147 40.1
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-17 92.8 71 83.1
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.3e-17 92.8 57 78.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 5.6e-17 92.4 157 42.7
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.1e-16 88.6 158 38.6
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-15 87.8 71 76.1
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 3.1e-15 86.7 74 68.9
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.9e-15 85.5 155 36.1
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.6e-14 83.6 70 68.6
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-12 76.3 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 7.1e-12 75.5 46 73.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.3e-12 75.1 162 36.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.1e-11 73.9 157 39.5
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.5e-11 73.2 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.0e-11 72.4 264 31.1
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.8e-08 62.8 140 40.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 1.2e-06 58.2 60 55.0


User provided reference genes

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