Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.1e-139 500.0 266 100.0
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 5.5e-126 454.5 261 90.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 6.3e-114 414.5 242 88.0
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 7.5e-107 391.0 252 82.5
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.2e-104 383.6 249 80.7
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 5.9e-104 381.3 249 80.7
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.0e-103 380.6 249 80.7
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.5e-102 376.7 251 79.7
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.8e-100 367.9 251 77.7
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 6.6e-95 351.3 244 77.0
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 6.6e-95 351.3 246 74.8
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 4.7e-93 345.1 253 73.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.8e-92 343.2 247 74.5
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 8.9e-92 340.9 245 73.9
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 8.9e-92 340.9 245 73.9
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 8.9e-92 340.9 245 73.9
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.5e-91 340.1 254 74.0
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 3.4e-91 339.0 253 71.5
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 3.4e-91 339.0 248 72.6
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 5.8e-91 338.2 248 73.0
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 9.8e-91 337.4 248 72.2
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.7e-90 336.7 252 74.2
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 2.2e-90 336.3 247 72.5
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 3.7e-90 335.5 252 71.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.2e-88 330.5 219 74.9
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 3.5e-88 328.9 249 69.1
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 3.5e-88 328.9 249 69.1
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 3.5e-88 328.9 246 73.2
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.6e-88 328.6 255 70.6
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 4.6e-88 328.6 247 72.5
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 7.8e-88 327.8 254 70.9
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 5.0e-87 325.1 243 71.2
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 8.6e-87 324.3 249 69.1
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 8.6e-87 324.3 249 69.1
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 1.1e-86 323.9 245 69.4
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.1e-86 323.9 254 70.1
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.9e-86 323.2 261 68.6
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.9e-86 323.2 245 71.0
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.5e-86 322.8 248 68.1
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 2.5e-86 322.8 246 69.9
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 4.3e-86 322.0 244 70.1
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 5.6e-86 321.6 250 68.4
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 5.6e-86 321.6 252 70.2
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 2.1e-85 319.7 246 67.9
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 2.1e-85 319.7 252 69.4
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.1e-85 319.7 256 69.5
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 4.7e-85 318.5 247 68.4
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 4.7e-85 318.5 273 65.2
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.8e-84 316.6 251 66.5
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 2.3e-84 316.2 190 80.5
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 8.9e-84 314.3 250 68.8
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.5e-83 313.5 257 66.9
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 2.0e-83 313.2 273 64.8
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 2.0e-83 313.2 251 66.5
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 3.4e-83 312.4 252 67.9
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 4.4e-83 312.0 249 67.9
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 5.8e-83 311.6 253 65.2
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 7.5e-83 311.2 202 76.7
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 9.9e-83 310.8 246 69.5
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 9.9e-83 310.8 249 67.5
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.7e-82 310.1 249 67.1
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.9e-82 309.3 244 67.6
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.7e-82 308.9 248 67.7
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.7e-82 308.9 248 67.7
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 1.1e-81 307.4 196 80.1
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 9.2e-81 304.3 253 67.2
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 1.2e-80 303.9 249 66.3
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.2e-80 303.9 248 67.3
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 7.8e-80 301.2 190 80.0
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.0e-79 300.8 243 68.3
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.9e-79 298.9 237 68.8
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 6.6e-79 298.1 189 73.5
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.5e-78 297.0 242 64.9
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.9e-78 296.6 194 72.7
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.9e-78 296.6 215 73.5
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 2.8e-77 292.7 229 66.8
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 2.8e-77 292.7 254 65.4
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.8e-76 290.0 227 69.2
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.4e-75 285.8 225 68.0
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.1e-73 280.8 247 62.8
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.4e-73 280.4 245 65.3
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 7.1e-73 278.1 225 66.7
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 1.6e-72 276.9 264 61.4
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.6e-72 276.9 250 62.4
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.1e-72 276.6 257 61.5
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.6e-72 275.4 248 62.9
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.0e-71 274.2 262 60.3
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.3e-71 273.9 262 60.3
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.3e-71 273.1 258 61.6
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 2.3e-71 273.1 186 71.0
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 2.3e-71 273.1 254 61.0
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 5.1e-71 271.9 252 62.3
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 6.6e-71 271.6 261 59.8
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 6.6e-71 271.6 228 65.8
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 3.6e-69 265.8 260 59.2
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 4.7e-69 265.4 166 79.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 8.1e-69 264.6 247 62.8
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 3.1e-68 262.7 248 61.3
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 4.0e-68 262.3 230 66.1
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 9.0e-68 261.2 262 57.6
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 2.0e-67 260.0 213 64.8
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 3.4e-67 259.2 242 58.3
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 7.6e-67 258.1 188 68.1
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 1.9e-65 253.4 153 83.0
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 4.3e-62 242.3 182 65.9
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 4.0e-60 235.7 211 62.6
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.4e-59 232.6 255 57.3
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 5.8e-59 231.9 141 82.3
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 1.0e-55 221.1 174 63.2
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.9e-55 219.2 189 59.3
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 3.8e-50 202.6 185 60.5
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 3.0e-31 139.8 98 72.4
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 6.7e-31 138.7 131 59.5
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 4.2e-25 119.4 95 66.3
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 1.4e-20 104.4 71 69.0
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-18 96.3 124 45.2
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.1e-17 94.7 71 63.4
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-15 87.0 134 35.1
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.3e-10 71.2 41 82.9
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.2e-08 64.7 44 70.5
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 1.0e-07 61.6 100 44.0
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.5e-06 57.8 105 40.0


User provided reference genes

Program Settings