Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.1e-216 756.5 412 100.0
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 9.3e-181 637.1 426 75.6
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 2.1e-177 625.9 426 73.9
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.4e-176 623.2 426 73.7
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 2.8e-161 572.4 408 71.6
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 8.2e-161 570.9 422 76.5
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 5.9e-159 564.7 450 70.0
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.4e-155 553.5 394 69.8
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.2e-151 540.4 403 66.7
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 9.4e-149 530.8 393 70.2
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.0e-147 527.3 394 73.4
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 3.3e-146 522.3 392 64.5
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 9.7e-146 520.8 392 64.3
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 2.0e-143 513.1 394 66.8
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 1.1e-141 507.3 356 71.3
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 1.9e-141 506.5 401 61.1
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.2e-141 505.8 401 61.1
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 4.2e-141 505.4 388 65.5
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 5.5e-141 505.0 401 60.8
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 1.6e-140 503.4 388 64.4
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 8.0e-140 501.1 278 88.1
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 8.2e-137 491.1 406 62.6
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 7.0e-136 488.0 402 61.2
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 9.1e-136 487.6 401 63.1
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 6.5e-134 481.5 388 62.1
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 6.5e-134 481.5 387 63.0
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.6e-132 476.9 408 59.6
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.7e-132 476.1 398 68.3
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.0e-131 474.2 385 62.9
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 1.0e-131 474.2 387 67.4
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 3.4e-130 469.2 396 68.9
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 9.8e-130 467.6 356 65.4
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 8.3e-129 464.5 366 63.1
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 1.4e-128 463.8 414 58.2
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 4.1e-128 462.2 410 58.0
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 7.7e-127 458.0 368 62.0
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 2.2e-126 456.4 356 63.8
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 1.0e-123 447.6 415 56.4
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.4e-123 447.2 413 55.4
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.3e-123 446.4 329 68.1
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.3e-123 446.4 406 59.9
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.2e-122 444.1 369 61.2
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.2e-122 444.1 370 60.3
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.3e-121 440.7 407 62.2
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 8.3e-121 438.0 392 56.6
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.1e-120 437.6 384 56.5
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 3.1e-120 436.0 392 56.1
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 5.4e-120 435.3 392 56.1
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 5.4e-120 435.3 396 56.3
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.2e-119 434.1 357 61.1
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 2.0e-119 433.3 396 57.8
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 2.0e-119 433.3 354 61.6
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 2.7e-119 433.0 409 55.3
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.7e-119 433.0 346 61.8
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.7e-118 430.3 346 61.0
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 2.9e-118 429.5 403 62.5
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.9e-118 429.5 345 62.9
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 6.6e-118 428.3 268 77.2
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 3.3e-117 426.0 382 55.5
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 5.6e-117 425.2 389 56.6
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.2e-116 424.1 395 55.9
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.1e-116 423.3 395 55.9
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 2.1e-116 423.3 402 54.2
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 4.0e-115 419.1 388 56.2
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 6.8e-115 418.3 391 55.8
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 5.7e-114 415.2 334 61.7
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 1.3e-113 414.1 401 53.4
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.1e-112 411.0 380 55.0
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.8e-112 410.2 279 70.3
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 3.2e-112 409.5 394 62.4
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 4.1e-112 409.1 337 61.1
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 9.2e-112 407.9 324 62.0
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 4.6e-111 405.6 370 57.6
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 1.3e-110 404.1 344 59.3
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.7e-110 403.7 279 69.9
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.2e-108 397.5 337 59.3
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 2.1e-108 396.7 353 55.0
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 3.6e-108 396.0 372 61.8
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.4e-107 394.0 267 70.4
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.4e-107 394.0 246 75.6
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 2.9e-105 386.3 349 55.9
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 4.9e-105 385.6 392 51.5
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 9.2e-104 381.3 333 58.0
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.7e-103 379.8 329 60.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.9e-101 373.6 246 72.8
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 9.5e-101 371.3 362 55.5
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 3.4e-98 362.8 328 57.6
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 4.4e-98 362.5 384 49.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 7.1e-96 355.1 356 60.7
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.5e-93 346.7 356 52.0
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 2.5e-93 346.7 396 54.5
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.1e-92 343.6 392 51.8
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.5e-90 337.4 218 73.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.6e-90 336.7 223 72.2
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 2.2e-89 333.6 339 51.6
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 3.3e-85 319.7 333 49.8
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 2.1e-84 317.0 248 63.7
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.9e-81 306.6 388 48.7
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 3.8e-81 306.2 264 57.6
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 8.7e-78 295.0 272 53.7
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.2e-74 284.6 177 78.0
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 3.4e-74 283.1 205 67.3
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.2e-49 200.7 260 50.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 6.5e-49 199.1 153 64.1
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 5.5e-48 196.1 183 55.2
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.1e-43 181.8 113 75.2
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.2e-39 168.3 381 39.4
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.2e-34 151.8 167 48.5
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.2e-32 143.7 205 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 9.4e-24 115.5 166 38.6
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 3.0e-22 110.5 176 34.1
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.7e-18 97.4 251 29.9
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.0e-17 95.5 170 35.9
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.7e-12 78.2 202 30.7
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.4e-11 75.1 194 31.4
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 5.4e-11 73.2 192 30.7
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 5.4e-11 73.2 188 31.9
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.0e-10 71.2 187 29.9
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 3.5e-10 70.5 195 28.7
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 4.5e-10 70.1 201 29.9
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 4.5e-10 70.1 201 29.9
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 4.5e-10 70.1 186 30.1
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.0e-09 68.9 179 30.7
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.7e-09 68.2 152 32.9
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.7e-09 68.2 185 30.3
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.2e-09 67.8 184 31.5
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 2.2e-09 67.8 201 29.4
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 5.0e-09 66.6 184 31.0
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 6.5e-09 66.2 47 61.7
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 6.5e-09 66.2 192 27.6
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 8.5e-09 65.9 204 27.9
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 5.5e-08 63.2 254 27.6
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 5.5e-08 63.2 163 31.3
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.6e-07 61.6 158 31.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.6e-07 61.6 199 28.1


User provided reference genes

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