Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.0e-33 146.4 83 100.0
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.3e-22 108.6 78 82.1
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 8.8e-22 106.7 67 88.1
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.7e-18 95.1 77 76.6
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 2.7e-15 85.1 77 70.1
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 2.7e-15 85.1 77 70.1
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 5.7e-13 77.4 71 64.8
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 7.5e-13 77.0 71 67.6
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 8.3e-12 73.6 82 61.0
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.1e-11 73.2 67 68.7
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.8e-11 72.4 73 60.3
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.4e-11 72.0 68 64.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 3.1e-11 71.6 68 64.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.4e-11 70.9 65 56.9
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 5.4e-11 70.9 70 62.9
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 5.4e-11 70.9 72 59.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 9.1e-11 70.1 70 55.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.2e-10 69.7 72 59.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.6e-10 69.3 65 61.5
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.6e-10 69.3 72 54.2
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.0e-10 68.9 72 58.3
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.7e-10 68.6 81 55.6
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.7e-10 68.6 71 57.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.5e-10 68.2 71 57.7
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 3.5e-10 68.2 68 63.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.5e-10 67.8 70 58.6
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.5e-10 67.8 65 61.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.9e-10 67.4 67 55.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.9e-10 67.4 66 63.6
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.9e-10 67.4 68 61.8
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.7e-10 67.0 67 55.2
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 7.7e-10 67.0 59 61.0
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.0e-09 66.6 70 58.6
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.0e-09 66.6 72 56.9
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-09 66.2 63 60.3
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.7e-09 65.9 66 59.1
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.7e-09 65.9 75 56.0
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-09 65.9 62 61.3
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.7e-09 65.9 70 60.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.7e-09 65.9 70 60.0
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-09 65.5 66 60.6
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-09 65.5 66 60.6
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.2e-09 65.5 73 57.5
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.9e-09 65.1 58 63.8
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 2.9e-09 65.1 59 62.7
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 3.8e-09 64.7 55 65.5
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.8e-09 64.7 62 62.9
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.8e-09 64.7 80 56.2
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 3.8e-09 64.7 61 59.0
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 5.0e-09 64.3 59 64.4
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 5.0e-09 64.3 70 54.3
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.0e-09 64.3 73 52.1
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.0e-09 64.3 73 56.2
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.0e-09 64.3 70 58.6
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 5.0e-09 64.3 65 52.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 6.5e-09 63.9 69 52.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.5e-09 63.9 72 51.4
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 8.5e-09 63.5 55 61.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 8.5e-09 63.5 71 54.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-08 63.2 58 62.1
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-08 63.2 58 62.1
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.1e-08 63.2 81 53.1
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-08 63.2 80 56.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.5e-08 62.8 67 62.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.5e-08 62.8 67 58.2
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.5e-08 62.8 83 48.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.9e-08 62.4 72 52.8
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.9e-08 62.4 72 52.8
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 1.9e-08 62.4 59 61.0
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.5e-08 62.0 57 61.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.2e-08 61.2 55 63.6
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 4.2e-08 61.2 61 54.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.2e-08 61.2 74 52.7
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 5.5e-08 60.8 68 52.9
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 5.5e-08 60.8 69 50.7
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 7.2e-08 60.5 73 49.3
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 7.2e-08 60.5 70 48.6
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.2e-08 60.5 74 51.4
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.2e-08 60.5 74 51.4
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 7.2e-08 60.5 70 54.3
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 7.2e-08 60.5 58 62.1
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 7.2e-08 60.5 71 54.9
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 9.4e-08 60.1 76 51.3
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 9.4e-08 60.1 58 58.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 9.4e-08 60.1 58 60.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 9.4e-08 60.1 70 52.9
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.2e-07 59.7 62 56.5
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.2e-07 59.7 58 58.6
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.2e-07 59.7 61 59.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.2e-07 59.7 70 52.9
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.2e-07 59.7 63 60.3
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.6e-07 59.3 71 52.1
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.6e-07 59.3 70 58.6
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.1e-07 58.9 58 56.9
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.1e-07 58.9 58 56.9
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.1e-07 58.9 61 55.7
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 2.7e-07 58.5 57 52.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.7e-07 58.5 57 64.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.7e-07 58.5 76 50.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 3.6e-07 58.2 49 63.3
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 3.6e-07 58.2 76 50.0
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 3.6e-07 58.2 57 57.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 3.6e-07 58.2 57 57.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 3.6e-07 58.2 57 57.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 3.6e-07 58.2 57 57.9
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 3.6e-07 58.2 57 57.9
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 3.6e-07 58.2 61 57.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 3.6e-07 58.2 69 53.6
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 4.7e-07 57.8 57 56.1
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 4.7e-07 57.8 79 49.4
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.7e-07 57.8 63 55.6
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 6.1e-07 57.4 68 54.4
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.1e-07 57.4 65 52.3
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 6.1e-07 57.4 70 51.4
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.0e-06 56.6 65 53.8
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.0e-06 56.6 69 52.2
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.4e-06 56.2 75 49.3
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.4e-06 56.2 61 54.1
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.4e-06 56.2 74 48.6
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.8e-06 55.8 49 63.3
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.8e-06 55.8 58 53.4
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.8e-06 55.8 69 52.2
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.8e-06 55.8 66 54.5
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.8e-06 55.8 66 54.5
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.3e-06 55.5 58 55.2
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 2.3e-06 55.5 73 49.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.0e-06 55.1 62 51.6
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.0e-06 55.1 79 49.4
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.0e-06 55.1 59 54.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 3.0e-06 55.1 66 54.5
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 4.0e-06 54.7 66 54.5
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 5.2e-06 54.3 65 55.4
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 5.2e-06 54.3 65 49.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 5.2e-06 54.3 78 52.6
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 6.8e-06 53.9 69 47.8
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.8e-06 53.9 71 49.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 6.8e-06 53.9 63 50.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 8.8e-06 53.5 57 52.6


User provided reference genes

Program Settings