Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.6e-95 352.1 176 100.0
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 4.8e-86 321.2 166 95.2
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 7.2e-74 280.8 147 94.6
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.2e-70 269.2 153 87.6
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.7e-70 268.5 153 87.6
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 8.3e-70 267.3 144 90.3
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 8.3e-70 267.3 144 90.3
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.1e-69 266.9 148 89.2
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.6e-68 263.1 156 84.0
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.6e-65 253.1 147 80.3
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.0e-64 248.4 144 81.2
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.2e-64 248.1 148 80.4
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 5.2e-64 248.1 149 81.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 8.8e-64 247.3 138 89.1
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.2e-63 246.9 148 78.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.0e-63 246.1 148 79.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 3.4e-63 245.4 161 74.5
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 3.4e-63 245.4 149 79.2
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.4e-63 245.0 155 74.8
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 4.4e-63 245.0 145 81.4
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 5.7e-63 244.6 154 76.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.9e-62 241.5 153 75.8
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.9e-62 241.5 151 77.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 6.3e-62 241.1 148 77.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 8.3e-62 240.7 157 74.5
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 8.3e-62 240.7 148 78.4
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.1e-61 240.4 146 79.5
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.1e-61 240.4 160 71.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.1e-61 240.4 157 75.8
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.4e-61 240.0 149 78.5
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-61 240.0 151 76.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-61 240.0 151 76.8
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.4e-61 240.0 147 76.9
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.8e-61 239.6 147 77.6
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.8e-61 239.6 156 74.4
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.4e-61 239.2 146 78.1
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 3.1e-61 238.8 145 78.6
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 3.1e-61 238.8 151 75.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 4.1e-61 238.4 164 73.2
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 4.1e-61 238.4 150 79.3
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.1e-61 238.4 147 76.9
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 5.4e-61 238.0 147 79.6
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 5.4e-61 238.0 147 79.6
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 7.0e-61 237.7 151 75.5
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 7.0e-61 237.7 151 75.5
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 9.2e-61 237.3 147 76.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.2e-60 236.9 149 73.8
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.0e-60 236.1 150 76.7
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.7e-60 235.7 148 77.7
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.7e-60 235.7 152 76.3
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 2.7e-60 235.7 151 74.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.7e-60 235.7 149 75.8
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.7e-60 235.7 149 75.8
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.5e-60 235.3 147 74.8
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 4.5e-60 235.0 160 73.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 7.8e-60 234.2 147 74.1
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.0e-59 233.8 145 79.3
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.0e-59 233.8 146 75.3
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.0e-59 233.8 151 74.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.3e-59 233.4 146 76.7
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-59 233.4 145 78.6
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.7e-59 233.0 147 76.9
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.7e-59 233.0 148 76.4
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.3e-59 232.6 148 75.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.9e-59 232.3 148 76.4
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.9e-59 232.3 147 75.5
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 3.8e-59 231.9 153 73.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 5.0e-59 231.5 141 79.4
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 5.0e-59 231.5 144 78.5
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.0e-59 231.5 147 74.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 6.6e-59 231.1 146 76.0
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 6.6e-59 231.1 147 74.8
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 6.6e-59 231.1 149 73.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 6.6e-59 231.1 147 75.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 6.6e-59 231.1 150 76.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 8.6e-59 230.7 145 76.6
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 8.6e-59 230.7 149 76.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 8.6e-59 230.7 153 74.5
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 8.6e-59 230.7 156 72.4
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.6e-59 230.7 153 73.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.1e-58 230.3 150 73.3
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.5e-58 229.9 145 76.6
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.9e-58 229.6 148 75.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 3.3e-58 228.8 147 74.1
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 5.6e-58 228.0 145 75.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 5.6e-58 228.0 145 75.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.6e-58 228.0 147 74.8
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.3e-58 227.6 147 74.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 7.3e-58 227.6 146 73.3
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.2e-57 226.9 149 71.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.2e-57 226.9 148 73.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.2e-57 226.9 156 73.1
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 2.8e-57 225.7 141 78.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 3.6e-57 225.3 149 75.8
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.0e-56 223.8 161 70.2
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.4e-56 223.4 148 73.0
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.8e-56 223.0 152 71.7
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.8e-56 223.0 148 74.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.8e-56 223.0 147 72.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.3e-56 222.6 177 66.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.3e-56 222.6 143 75.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 3.0e-56 222.2 149 73.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.0e-56 221.9 148 73.6
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 6.8e-56 221.1 145 75.9
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.6e-55 219.2 148 70.9
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 4.4e-55 218.4 150 70.0
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-54 216.5 136 78.7
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-54 216.5 136 78.7
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-54 216.5 136 78.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.2e-54 216.1 154 70.8
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 4.9e-54 214.9 151 70.2
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 4.9e-54 214.9 151 70.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-53 213.4 136 77.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.8e-53 213.0 142 73.2
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.4e-53 212.6 149 71.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 3.2e-53 212.2 122 83.6
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.2e-52 210.3 140 72.1
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.6e-52 209.9 154 68.2
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 4.6e-52 208.4 149 68.5
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.3e-51 206.8 148 66.2
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.9e-51 205.3 152 70.4
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.9e-51 205.3 152 70.4
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.3e-50 201.1 125 76.8
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 7.3e-50 201.1 140 69.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 7.3e-50 201.1 139 69.8
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.6e-49 199.9 122 77.9
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.7e-49 198.4 123 76.4
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.2e-49 198.0 148 63.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-48 197.2 152 67.8
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.4e-48 196.8 121 76.0
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.8e-48 196.4 148 64.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.0e-47 193.0 149 64.4
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 3.7e-46 188.7 131 70.2
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.4e-45 186.8 146 62.3
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 4.1e-45 185.3 144 65.3
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 9.2e-45 184.1 148 59.5
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.2e-44 183.7 103 82.5
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 2.0e-44 183.0 140 66.4
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.3e-43 180.3 150 60.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 6.6e-43 177.9 150 64.0
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 4.3e-42 175.3 106 78.3
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-41 173.7 112 77.7
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.3e-40 169.5 101 77.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 5.2e-40 168.3 177 55.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.5e-39 166.8 101 77.2
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 4.1e-37 158.7 94 79.8
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 3.3e-34 149.1 92 76.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 5.6e-34 148.3 107 65.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.8e-33 146.0 81 84.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 6.2e-33 144.8 126 65.1
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 6.2e-33 144.8 89 77.5
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 4.0e-32 142.1 82 81.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.4e-24 117.1 147 48.3
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 3.1e-24 115.9 74 75.7
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 9.9e-23 110.9 96 58.3
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.7e-19 100.1 134 41.8
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.3e-17 94.0 61 73.8
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 2.0e-15 86.7 164 31.1
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 9.3e-13 77.8 77 53.2
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.6e-12 77.0 49 75.5
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.5e-10 70.5 137 34.3
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 4.0e-08 62.4 36 77.8
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 9.9e-07 57.8 32 78.1
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 2.2e-06 56.6 38 71.1


User provided reference genes

Program Settings