Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 1.9e-168 595.9 323 100.0
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 3.2e-75 286.2 336 56.5
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.5e-56 224.2 311 48.2
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 3.6e-55 219.5 284 52.1
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 3.1e-54 216.5 314 47.1
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 4.0e-54 216.1 283 51.6
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.2e-53 214.5 316 47.5
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 1.5e-53 214.2 281 52.0
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 7.6e-53 211.8 285 52.3
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 4.9e-52 209.1 276 53.3
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 9.2e-51 204.9 268 50.7
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.6e-50 204.1 268 50.4
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 6.0e-50 202.2 268 50.0
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 1.0e-49 201.4 286 47.9
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 5.6e-48 195.7 283 48.4
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 5.6e-48 195.7 284 46.8
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 3.6e-47 193.0 254 50.4
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 1.1e-46 191.4 280 45.7
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.4e-46 191.0 299 46.2
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 1.4e-46 191.0 287 46.0
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 1.8e-46 190.7 283 48.1
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.8e-46 190.7 298 45.3
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.8e-46 190.7 273 47.3
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 3.1e-46 189.9 267 47.6
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.2e-45 188.0 299 45.5
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 1.2e-45 188.0 275 47.3
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 1.5e-45 187.6 245 46.5
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 2.0e-45 187.2 275 46.9
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 2.6e-45 186.8 286 48.6
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 3.4e-45 186.4 256 49.6
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 3.4e-45 186.4 283 44.9
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 5.8e-45 185.7 272 47.4
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 7.6e-45 185.3 286 45.1
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.3e-44 184.5 228 53.5
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 2.2e-44 183.7 302 43.4
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 2.9e-44 183.3 284 43.7
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 2.9e-44 183.3 284 43.7
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 6.4e-44 182.2 250 47.2
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 6.4e-44 182.2 267 45.7
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 6.4e-44 182.2 269 46.8
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 6.4e-44 182.2 280 46.1
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 2.4e-43 180.3 279 45.9
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 3.2e-43 179.9 284 44.4
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 1.6e-42 177.6 230 48.3
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 2.7e-42 176.8 267 44.6
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 2.7e-42 176.8 245 46.9
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 6.0e-42 175.6 267 45.7
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 6.0e-42 175.6 287 45.6
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.7e-41 174.1 277 43.3
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 3.0e-41 173.3 262 44.7
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 3.9e-41 172.9 257 46.3
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 3.9e-41 172.9 282 45.7
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 3.9e-41 172.9 285 45.3
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 5.1e-41 172.6 227 51.5
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 8.7e-41 171.8 284 42.6
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 8.7e-41 171.8 242 46.3
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 2.5e-40 170.2 286 43.4
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 3.3e-40 169.9 221 51.6
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 1.3e-39 167.9 270 47.0
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 2.8e-39 166.8 261 44.8
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 4.8e-39 166.0 249 45.4
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.1e-38 164.9 268 42.5
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.9e-38 162.2 261 42.9
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.5e-37 161.0 256 46.1
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 2.6e-37 160.2 254 42.9
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 4.5e-37 159.5 318 37.7
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 7.6e-37 158.7 254 41.7
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 7.6e-37 158.7 234 48.3
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 9.9e-37 158.3 222 48.2
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 6.4e-36 155.6 218 45.0
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.4e-35 154.5 217 46.5
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 1.9e-35 154.1 217 46.5
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 9.3e-35 151.8 237 42.6
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 1.6e-34 151.0 254 43.3
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 2.1e-34 150.6 254 42.5
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 2.3e-33 147.1 249 42.2
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 5.1e-33 146.0 258 42.2
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 1.9e-32 144.1 270 41.9
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 3.3e-32 143.3 235 43.0
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 3.3e-32 143.3 242 42.6
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 3.3e-32 143.3 242 42.6
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 7.4e-32 142.1 227 41.9
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 9.6e-32 141.7 243 46.1
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 9.6e-32 141.7 242 45.9
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.3e-31 141.4 273 42.5
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 1.6e-31 141.0 304 36.5
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 2.1e-31 140.6 271 39.9
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 2.1e-31 140.6 271 39.9
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 2.8e-31 140.2 227 44.5
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 6.2e-31 139.0 217 42.4
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 1.1e-30 138.3 239 41.4
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 4.0e-30 136.3 224 42.4
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 3.4e-29 133.3 325 36.0
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 7.9e-26 122.1 209 40.7
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 7.9e-26 122.1 209 40.7
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 1.3e-25 121.3 258 40.7
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 2.3e-25 120.6 232 39.7
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 4.6e-18 96.3 217 34.6
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 3.7e-15 86.7 104 52.9
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 2.2e-12 77.4 76 56.6
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 7.2e-11 72.4 209 31.1
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 6.1e-10 69.3 112 40.2
SEGI_13333 Sequoiadendron giganteum HOM05D007298 ORTHO05D009226 2.5e-08 63.9 143 37.1


User provided reference genes

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