Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.1e-204 716.5 378 100.0
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.0e-169 599.4 378 85.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 2.2e-168 595.9 379 84.7
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.2e-152 542.7 384 79.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 7.1e-143 511.1 386 75.6
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.9e-135 486.5 386 73.3
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.9e-120 436.0 395 65.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 4.9e-120 435.3 397 65.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.1e-119 434.1 392 66.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.3e-117 426.4 394 66.0
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.1e-116 424.1 402 64.2
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 7.4e-116 421.4 402 63.4
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.1e-115 419.9 404 63.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.4e-114 417.2 399 65.2
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 5.8e-113 411.8 392 63.8
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.3e-112 410.6 400 63.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.0e-109 399.4 398 60.1
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-108 397.1 395 62.5
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.3e-108 396.0 396 62.4
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-107 393.3 393 62.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 6.2e-107 391.7 336 69.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.5e-105 385.6 395 62.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-104 384.0 396 61.9
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.8e-104 382.5 408 58.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.5e-104 381.7 360 64.7
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.1e-103 380.9 396 60.6
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 2.7e-102 376.3 400 58.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.7e-102 376.3 422 58.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.6e-102 375.6 406 58.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.1e-100 370.9 342 65.8
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 4.3e-100 369.0 420 58.1
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.3e-100 369.0 398 59.5
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.6e-99 367.1 402 58.5
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.7e-99 365.9 393 60.3
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.3e-99 365.2 394 60.2
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.4e-98 363.2 402 56.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 6.9e-98 361.7 386 59.3
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.0e-98 361.3 386 59.3
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.2e-97 360.9 389 58.6
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.6e-97 359.8 408 58.8
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.5e-96 355.1 349 61.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 6.5e-96 355.1 387 59.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 8.5e-96 354.8 394 59.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.1e-95 354.4 417 56.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.1e-95 354.4 397 58.4
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.5e-95 353.2 349 61.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.2e-95 352.8 387 58.4
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.7e-94 349.7 349 61.0
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 6.1e-94 348.6 410 57.6
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.3e-93 347.4 347 60.8
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.9e-93 345.9 401 57.6
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.2e-91 340.1 402 53.7
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.3e-91 338.6 421 53.9
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 8.2e-91 338.2 366 59.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.3e-90 335.5 366 59.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.1e-90 334.7 366 58.5
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 3.8e-88 329.3 399 54.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.5e-87 326.6 392 54.6
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.5e-87 326.6 387 58.7
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 7.2e-87 325.1 392 54.3
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 4.6e-86 322.4 385 55.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 6.1e-86 322.0 435 53.1
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 7.9e-86 321.6 396 55.1
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.4e-85 320.9 435 52.4
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.0e-85 319.7 402 54.2
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.0e-84 317.0 336 57.7
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.4e-84 315.8 415 52.3
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.7e-83 312.8 393 51.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.4e-82 310.8 395 55.7
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.8e-82 310.5 389 55.0
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 3.1e-82 309.7 374 54.3
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-79 300.1 318 60.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.7e-78 296.6 395 50.6
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 7.9e-78 295.0 397 51.6
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.0e-77 294.7 394 52.3
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.4e-77 294.3 394 50.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.3e-77 293.5 414 52.9
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 5.2e-77 292.4 387 51.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.5e-76 290.8 398 51.3
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.7e-75 287.3 399 51.1
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 4.8e-75 285.8 391 50.1
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.4e-74 284.3 354 53.1
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.4e-74 283.5 367 51.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 5.3e-74 282.3 383 49.9
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 7.0e-74 282.0 390 50.8
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.2e-73 281.2 387 51.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.6e-73 280.8 398 49.7
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 7.7e-73 278.5 335 56.1
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 3.8e-72 276.2 390 50.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.1e-71 274.6 396 47.7
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.5e-71 274.2 300 58.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.4e-69 267.7 387 49.1
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.4e-69 267.7 410 48.8
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.6e-68 263.5 255 65.5
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 9.7e-68 261.5 388 48.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.7e-67 260.8 393 49.9
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.2e-67 260.4 353 52.7
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.8e-67 260.0 390 49.7
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.7e-67 259.6 377 50.4
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.8e-67 259.2 377 50.1
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 4.8e-67 259.2 378 51.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 4.8e-67 259.2 378 51.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 8.2e-67 258.5 361 51.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 8.2e-67 258.5 361 50.7
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.1e-66 258.1 378 50.5
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.4e-66 256.9 379 49.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 5.3e-66 255.8 378 50.3
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 9.1e-66 255.0 356 49.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 3.5e-65 253.1 305 57.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.3e-64 251.1 400 45.5
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.0e-61 241.5 326 52.5
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.3e-61 240.4 402 43.8
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.7e-60 235.7 395 44.3
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.7e-60 235.7 276 58.7
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.7e-60 235.7 276 58.7
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.3e-56 223.8 267 53.6
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.8e-56 223.0 425 40.5
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.6e-54 217.6 320 47.8
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 2.6e-52 210.3 189 64.0
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.1e-50 204.9 277 48.7
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.6e-49 201.1 216 56.5
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 3.8e-48 196.4 267 50.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.4e-44 183.3 330 41.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.1e-42 178.3 300 43.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.4e-42 177.2 234 53.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 6.2e-38 162.5 372 38.7
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.4e-36 156.8 187 52.4
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 8.3e-35 152.1 368 36.7
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-33 146.0 213 51.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-33 146.0 213 51.2
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.0e-32 143.7 345 37.4
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.0e-32 143.7 106 73.6
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 4.3e-31 139.8 117 68.4
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-31 139.8 127 63.0
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-30 138.3 206 50.5
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.0e-24 118.6 244 39.8
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.7e-24 117.9 180 52.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.3e-24 117.5 285 37.5
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-19 100.5 195 43.1
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-19 100.5 195 43.1
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.4e-19 99.0 195 42.6
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-18 98.6 195 42.6
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.9e-18 97.8 106 61.3
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-18 97.1 195 42.1
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-18 96.7 195 42.6
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 4.3e-15 86.7 76 64.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 7.3e-15 85.9 138 52.2
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.9e-13 79.3 195 37.9
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 3.4e-12 77.0 166 35.5
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 9.9e-12 75.5 173 39.9
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 1.4e-10 71.6 93 51.6
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 4.6e-09 66.6 81 58.0
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 4.6e-09 66.6 115 38.3
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 2.3e-08 64.3 81 56.8
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 3.9e-08 63.5 222 28.8
BcaNung00109 Brassica carinata HOM05D004683 ORTHO05D005388 6.2e-06 56.2 130 38.5


User provided reference genes

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