Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.4e-251 872.5 434 100.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 8.2e-204 713.8 422 87.2
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 4.2e-200 701.4 422 83.6
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.1e-183 646.0 422 77.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.1e-183 646.0 422 77.5
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 6.8e-182 641.0 422 76.3
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-176 623.2 424 75.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-176 623.2 424 75.5
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 5.6e-176 621.3 424 73.6
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 5.6e-176 621.3 424 73.6
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 7.3e-176 620.9 423 74.2
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.0e-174 617.1 423 74.2
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.8e-174 616.3 424 72.6
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.4e-173 611.7 425 71.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 4.9e-172 608.2 450 69.1
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.9e-172 608.2 425 72.2
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.9e-171 606.3 424 71.0
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 5.0e-169 598.2 424 69.6
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 7.3e-168 594.3 423 69.5
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-166 589.0 419 70.9
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.1e-166 589.0 425 69.9
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.2e-165 587.0 425 69.2
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.5e-165 586.6 424 70.5
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.6e-165 585.9 418 69.6
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.4e-165 585.5 424 69.1
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.4e-165 585.1 414 69.6
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 4.4e-165 585.1 424 70.3
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 5.8e-165 584.7 419 70.6
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 5.8e-165 584.7 435 67.4
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 9.8e-165 583.9 424 70.3
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.3e-164 583.6 424 69.8
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 2.9e-164 582.4 424 68.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.9e-164 582.4 425 69.9
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.9e-164 581.6 413 70.2
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.9e-164 581.6 413 70.2
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 6.4e-164 581.3 424 69.1
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-163 579.3 426 69.5
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.4e-163 579.3 417 70.3
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 4.1e-163 578.6 425 68.9
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.1e-163 578.6 423 68.6
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 5.4e-163 578.2 424 69.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.2e-162 577.0 413 70.0
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.2e-162 577.0 423 68.8
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.6e-162 576.6 423 68.1
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 2.7e-162 575.9 424 67.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 3.5e-162 575.5 425 68.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 4.6e-162 575.1 423 68.6
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.6e-162 575.1 419 68.3
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 6.0e-162 574.7 425 68.9
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.0e-162 574.7 401 71.8
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 6.0e-162 574.7 425 68.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 6.0e-162 574.7 423 68.3
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 7.8e-162 574.3 423 68.1
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.0e-161 573.9 425 68.2
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.1e-161 571.6 416 68.3
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 5.1e-161 571.6 424 67.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 6.6e-161 571.2 424 67.5
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.9e-160 569.7 420 67.4
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.5e-160 569.3 424 67.0
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 4.3e-160 568.5 393 73.0
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-159 567.0 444 66.0
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.6e-159 566.6 424 66.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.1e-159 566.2 423 67.6
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.8e-159 565.8 414 68.6
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.8e-159 565.8 420 66.9
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.6e-159 565.5 425 66.6
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 6.2e-159 564.7 423 66.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.4e-158 563.5 420 66.9
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 6.8e-158 561.2 398 69.8
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 6.8e-158 561.2 417 66.2
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.2e-157 560.5 414 67.9
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 3.4e-157 558.9 418 68.2
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.7e-156 556.6 423 66.4
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 2.9e-156 555.8 417 66.9
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.7e-156 555.4 415 66.3
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.9e-155 553.1 424 66.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.2e-155 552.4 424 66.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 4.1e-155 552.0 423 65.2
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.6e-154 550.1 412 67.0
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 6.0e-154 548.1 444 62.8
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.3e-153 547.0 412 66.5
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 2.3e-153 546.2 423 65.5
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 3.0e-153 545.8 412 66.3
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 3.0e-153 545.8 425 66.1
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 8.6e-153 544.3 425 64.9
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.5e-152 543.5 426 65.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.3e-152 542.3 415 65.5
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 3.3e-152 542.3 427 66.3
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 7.3e-152 541.2 424 65.1
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 9.5e-152 540.8 423 65.5
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.6e-151 540.0 423 65.0
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.1e-150 537.3 398 67.1
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.4e-150 537.0 412 65.5
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.8e-150 536.6 419 64.7
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.4e-150 536.2 412 65.8
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 3.1e-150 535.8 412 65.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.1e-150 535.8 427 65.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.5e-149 533.5 412 65.3
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.5e-149 533.5 412 65.3
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 8.4e-148 527.7 412 64.3
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 5.4e-147 525.0 436 62.2
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 5.4e-147 525.0 441 61.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.2e-146 523.9 426 62.7
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 4.6e-146 521.9 423 62.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.7e-145 520.0 423 61.7
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.1e-142 510.8 424 60.8
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.4e-141 505.4 401 64.6
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.5e-136 490.3 443 58.9
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 9.9e-133 477.6 488 53.1
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.4e-131 473.8 425 60.0
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 4.2e-131 472.2 415 56.6
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 6.0e-130 468.4 422 56.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.0e-129 467.6 419 58.5
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.3e-129 466.5 424 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.0e-129 466.1 417 56.6
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.9e-126 454.9 313 71.9
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.0e-121 441.0 399 59.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.5e-109 399.1 314 65.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 5.7e-104 382.1 285 66.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 2.2e-84 317.0 266 58.3
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.4e-80 302.8 508 38.6
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.5e-77 293.1 221 65.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.1e-75 288.1 388 45.9
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 7.7e-69 265.4 168 77.4
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.8e-65 254.2 285 53.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.7e-61 240.4 419 37.5
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.9e-61 239.2 232 53.0
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.4e-56 223.4 142 81.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.1e-54 216.5 265 46.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.6e-52 209.1 241 47.7
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.0e-48 197.6 168 56.5
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 5.1e-44 183.0 434 32.3
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-41 175.3 327 37.9
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.9e-39 166.4 176 48.9
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.6e-34 151.4 440 29.1
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.1e-34 151.0 440 30.0
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.1e-34 149.1 378 30.7
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 8.9e-33 145.6 213 46.5
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 7.1e-30 136.0 168 46.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 9.6e-19 99.0 217 32.7
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-12 77.4 64 57.8
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.9e-11 74.7 64 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.3e-11 73.9 158 34.2
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 9.0e-09 65.9 59 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.3e-07 62.0 83 47.0
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.9e-06 58.2 70 47.1


User provided reference genes

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