Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1321100 Malus domestica HOM05D007941 ORTHO05D010050 0.0e+00 1369.0 702 100.0
MD05G1345700 Malus domestica HOM05D007941 ORTHO05D010050 0.0e+00 1166.0 703 84.6
Prupe.4G021200 Prunus persica HOM05D007941 ORTHO05D010050 9.3e-290 1000.0 712 75.6
RcHm_v2.0_Chr5g0003191 Rosa chinensis HOM05D007941 ORTHO05D010050 2.1e-265 919.1 708 70.2
FAN25G1443 Fragaria x ananassa HOM05D007941 ORTHO05D010050 7.0e-245 850.9 712 64.6
FvH4_3g02100 Fragaria vesca HOM05D007941 ORTHO05D010050 2.7e-244 849.0 688 67.2
Haze_06797 Corylus avellana HOM05D007941 ORTHO05D010050 1.1e-226 790.4 720 61.5
Cfa000224 Carpinus fangiana HOM05D007941 ORTHO05D010050 1.9e-226 789.6 717 62.3
QL05p073215 Quercus lobata HOM05D007941 ORTHO05D010050 1.8e-224 783.1 721 60.7
Atru.chr10.2217 Acer truncatum HOM05D007941 ORTHO05D010050 6.4e-206 721.5 705 58.0
Thecc.06G220000 Theobroma cacao HOM05D007941 ORTHO05D010050 1.0e-203 714.1 715 56.9
Manes.16G007400 Manihot esculenta HOM05D007941 ORTHO05D010050 1.5e-199 700.3 699 55.8
TWI38G0160 Tripterygium wilfordii HOM05D007941 ORTHO05D010050 3.2e-197 692.6 718 54.3
CANSAT56G1781 Cannabis sativa HOM05D007941 ORTHO05D010050 1.5e-194 683.7 731 56.6
Potri.004G015401 Populus trichocarpa HOM05D007941 ORTHO05D010050 4.9e-190 668.7 701 55.3
Gorai.011G014100 Gossypium raimondii HOM05D007941 ORTHO05D010050 1.9e-189 666.8 692 54.6
Ciclev10017854m.g Citrus clementina HOM05D007941 ORTHO05D010050 4.2e-189 665.6 725 54.8
CiPaw.09G091700 Carya illinoinensis HOM05D007941 ORTHO05D010050 1.6e-188 663.7 635 60.2
Gohir.D10G012450 Gossypium hirsutum HOM05D007941 ORTHO05D010050 2.3e-187 659.8 692 54.2
TAR627G0026 Trochodendron aralioides HOM05D007941 ORTHO05D010050 5.6e-186 655.2 736 55.4
COL.COLO4_31770 Corchorus olitorius HOM05D007941 ORTHO05D010050 7.3e-186 654.8 706 54.1
Sabra04G0007600 Salix brachista HOM05D007941 ORTHO05D010050 1.4e-184 650.6 707 53.3
Nn1g07127 Nelumbo nucifera HOM05D007941 ORTHO05D010050 3.8e-182 642.5 738 52.3
Phvul.003G078500 Phaseolus vulgaris HOM05D007941 ORTHO05D010050 1.1e-181 641.0 712 52.9
Gohir.A10G012680 Gossypium hirsutum HOM05D007941 ORTHO05D010050 7.9e-180 634.8 690 53.6
Cpa.g.sc152.13 Carica papaya HOM05D007941 ORTHO05D010050 1.2e-175 620.9 723 52.3
VMungo1215G2837 Vigna mungo HOM05D007941 ORTHO05D010050 1.2e-175 620.9 705 51.1
Glyma.17G013700 Glycine max HOM05D007941 ORTHO05D010050 1.2e-172 610.9 712 51.5
Lj4g0020812 Lotus japonicus HOM05D007941 ORTHO05D010050 2.8e-169 599.7 705 49.9
Actinidia26916 Actinidia chinensis HOM05D007941 ORTHO05D010050 2.4e-168 596.7 720 50.6
Sed0010816 Sechium edule HOM05D007941 ORTHO05D010050 2.4e-160 570.1 705 48.9
CsaV3_1G010790 Cucumis sativus L. HOM05D007941 ORTHO05D010050 4.5e-159 565.8 711 48.9
arahy.Tifrunner.gnm1.ann1.CCWF18 Arachis hypogaea HOM05D007941 ORTHO05D010050 2.9e-158 563.1 697 49.1
Cc09_g01710 Coffea canephora HOM05D007941 ORTHO05D010050 2.1e-156 557.0 734 48.2
PSO832G2769 Papaver somniferum HOM05D007941 ORTHO05D010050 6.1e-156 555.4 737 48.4
ClCG03G004750 Citrullus lanatus HOM05D007941 ORTHO05D010050 1.5e-154 550.8 707 49.1
arahy.Tifrunner.gnm1.ann1.N60BY5 Arachis hypogaea HOM05D007941 ORTHO05D010050 6.9e-152 542.0 694 48.0
Ca_21085_v3 Cicer arietinum L. HOM05D007941 ORTHO05D010050 2.6e-151 540.0 701 47.6
Lj1C1230T3 Lonicera japonica HOM05D007941 ORTHO05D010050 1.2e-148 531.2 593 52.6
FAN21G2241 Fragaria x ananassa HOM05D007941 ORTHO05D010050 1.1e-146 524.6 358 76.3
TPR.G37125 Trifolium pratense HOM05D007941 ORTHO05D010050 2.6e-146 523.5 808 43.2
MELO3C002458.2 Cucumis melo HOM05D007941 ORTHO05D010050 6.9e-144 515.4 724 45.2
Solyc03g031660.1 Solanum lycopersicum HOM05D007941 ORTHO05D010050 4.7e-140 502.7 698 46.7
Sopen03g005520 Solanum pennellii HOM05D007941 ORTHO05D010050 1.4e-139 501.1 698 46.3
Nitab4.5_0012670g0020 Nicotiana tabacum HOM05D007941 ORTHO05D010050 5.0e-134 482.6 678 44.7
Dinv13890 Davidia involucrata HOM05D007941 ORTHO05D010050 1.0e-131 474.9 493 56.2
PGR004G0641 Punica granatum HOM05D007941 ORTHO05D010050 1.7e-129 467.6 716 44.6
Nn1g03523 Nelumbo nucifera HOM05D007941 ORTHO05D010050 1.6e-127 461.1 378 63.5
GSVIVG01012729001 Vitis vinifera HOM05D007941 ORTHO05D010050 3.5e-127 459.9 423 61.9
CiPaw.09G091500 Carya illinoinensis HOM05D007941 ORTHO05D010050 1.7e-126 457.6 419 62.1
Peaxi162Scf00502g00214 Petunia axillaris HOM05D007941 ORTHO05D010050 3.0e-123 446.8 697 43.8
Nitab4.5_0007864g0050 Nicotiana tabacum HOM05D007941 ORTHO05D010050 7.0e-120 435.6 680 43.2
Medtr4g132080 Medicago truncatula HOM05D007941 ORTHO05D010050 5.9e-111 406.0 481 50.3
CDE05G3547 Ceratophyllum demersum HOM05D007941 ORTHO05D010050 8.6e-110 402.1 479 49.3
AUR62012706 Chenopodium quinoa HOM05D007941 ORTHO05D010050 3.6e-108 396.7 421 54.2
EL10Ac8g20054 Beta vulgaris HOM05D007941 ORTHO05D010050 8.0e-108 395.6 664 42.2
Hma1.2p1_0749F.1_g212520 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 3.5e-103 380.2 208 86.1
Hma1.2p1_0749F.1_g212543 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 3.5e-103 380.2 208 86.1
Pp3c25_7620 Physcomitrium patens HOM05D007941 ORTHO05D010050 6.4e-97 359.4 640 39.5
Mapoly0124s0009 Marchantia polymorpha HOM05D007941 ORTHO05D010050 1.1e-93 348.6 674 41.8
MBI02_g07163_MAGBIO Magnolia biondii HOM05D007941 ORTHO05D010050 3.9e-62 243.8 680 32.6
Glyma.07G260250 Glycine max HOM05D007941 ORTHO05D010050 5.5e-48 196.8 371 38.0
Dinv20049 Davidia involucrata HOM05D007941 ORTHO05D010050 7.1e-48 196.4 210 52.9
SEGI_08485 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 8.2e-44 183.0 300 45.3
Dinv20048 Davidia involucrata HOM05D007941 ORTHO05D010050 6.1e-39 166.8 263 46.8
FAN21G0178 Fragaria x ananassa HOM05D007941 ORTHO05D010050 2.5e-37 161.4 183 54.1
AUR62021948 Chenopodium quinoa HOM05D007941 ORTHO05D010050 9.1e-35 152.9 265 43.8
SEGI_17062 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 6.3e-28 130.2 70 82.9
AUR62021949 Chenopodium quinoa HOM05D007941 ORTHO05D010050 3.5e-26 124.4 319 33.5
SEGI_18097 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 5.9e-26 123.6 119 56.3
ATR0794G083 Amborella trichopoda HOM05D007941 ORTHO05D010050 2.1e-23 115.2 261 32.6
ATR0794G095 Amborella trichopoda HOM05D007941 ORTHO05D010050 1.4e-19 102.4 212 40.1
Nn1g03524 Nelumbo nucifera HOM05D007941 ORTHO05D010050 4.8e-12 77.4 115 47.8
PSO210G6634 Papaver somniferum HOM05D007941 ORTHO05D010050 7.7e-10 70.1 139 37.4
Medtr4g132090 Medicago truncatula HOM05D007941 ORTHO05D010050 1.0e-09 69.7 146 34.2
PGSC0003DMG400005076 Solanum tuberosum HOM05D007941 ORTHO05D010050 3.2e-08 64.7 194 32.5


User provided reference genes

Program Settings