Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1313.5 633 100.0
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1257.3 633 94.5
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 0.0e+00 1223.8 633 90.8
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 0.0e+00 1151.7 636 85.7
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 0.0e+00 1143.6 636 84.4
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1117.4 633 82.9
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 0.0e+00 1117.4 633 82.3
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1117.1 633 82.5
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1113.2 632 82.1
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1113.2 632 82.1
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1111.3 633 82.0
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 0.0e+00 1104.0 633 80.7
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1096.3 633 80.4
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 0.0e+00 1095.1 633 81.5
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 0.0e+00 1094.7 633 80.4
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 0.0e+00 1092.4 633 80.7
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1091.6 633 80.3
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 0.0e+00 1086.2 633 80.4
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 8.7e-311 1069.7 635 80.3
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 8.7e-311 1069.7 635 80.5
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 7.3e-310 1066.6 635 80.2
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 9.5e-310 1066.2 635 77.2
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 8.1e-309 1063.1 609 80.6
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 4.4e-307 1057.4 635 79.5
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 7.8e-304 1046.6 635 77.8
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 3.0e-303 1044.6 635 78.0
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.5e-302 1042.3 633 75.8
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 4.7e-301 1037.3 591 81.6
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.8e-300 1035.4 634 76.2
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 3.1e-300 1034.6 635 78.0
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.2e-298 1028.5 636 76.3
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.1e-297 1026.2 633 75.8
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 4.2e-297 1024.2 641 73.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.9e-295 1017.7 634 73.8
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 2.8e-293 1011.5 633 75.5
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.5e-291 1005.7 633 72.0
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.6e-291 1005.0 633 71.9
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.9e-286 988.8 633 71.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 6.2e-285 983.8 605 77.7
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.8e-276 955.7 636 71.5
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.1e-276 954.9 622 70.9
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.1e-273 946.4 633 69.7
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.3e-271 938.7 634 67.8
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.2e-248 863.2 644 63.8
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 9.1e-244 847.0 638 64.1
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.1e-240 835.9 638 61.4
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 8.8e-239 830.5 635 63.1
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.2e-235 820.1 636 61.2
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 6.5e-234 814.3 534 72.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 8.5e-234 813.9 638 60.3
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 8.5e-234 813.9 640 59.8
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.9e-233 812.8 635 60.3
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.9e-233 812.8 635 60.3
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.8e-228 796.2 639 59.3
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.7e-224 782.3 546 67.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.5e-219 765.4 636 57.7
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 3.5e-219 765.4 636 57.1
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 9.6e-185 651.0 640 51.1
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.9e-181 639.4 640 49.4
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 2.4e-180 636.3 643 49.6
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 4.4e-174 615.5 382 75.9
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 4.8e-144 515.8 303 78.2
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.4e-134 483.0 739 38.2
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 6.3e-120 435.6 275 76.0
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 1.6e-115 421.0 271 72.7
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 9.8e-113 411.8 244 77.9
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 3.6e-107 393.3 224 81.2
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.8e-106 391.0 247 70.0
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 6.8e-106 389.0 272 65.4
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 9.8e-105 385.2 272 64.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.0e-102 377.5 241 73.0
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 5.0e-101 372.9 256 68.0
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 1.5e-100 371.3 256 68.0
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 2.5e-100 370.5 252 68.3
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.2e-97 361.7 252 67.5
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 9.8e-89 332.0 255 60.0
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.6e-70 271.6 257 56.4
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 4.2e-55 220.3 170 61.2
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 3.3e-52 210.7 130 78.5
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 2.8e-43 181.0 191 53.4
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 6.0e-38 163.3 376 31.1
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 6.0e-38 163.3 374 32.9
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 7.9e-38 162.9 376 31.1
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 7.9e-38 162.9 368 32.9
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 5.1e-37 160.2 377 29.4
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.5e-36 158.7 366 32.8
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.9e-36 158.3 376 31.6
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.9e-36 158.3 382 31.7
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 4.3e-36 157.1 386 31.9
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 7.4e-36 156.4 358 32.1
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.3e-35 155.6 378 30.7
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.3e-35 155.6 374 33.7
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.6e-35 155.2 387 31.8
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.8e-35 154.5 355 28.7
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.8e-35 154.5 376 32.2
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 6.3e-35 153.3 376 30.3
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 6.3e-35 153.3 376 30.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 6.3e-35 153.3 368 31.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.1e-34 152.5 387 30.0
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.1e-34 152.5 392 31.1
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.8e-34 151.8 375 30.7
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.8e-34 151.8 371 29.6
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.4e-34 151.4 372 29.0
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 3.1e-34 151.0 378 29.6
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.1e-34 150.6 372 29.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 6.9e-34 149.8 386 29.5
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 6.9e-34 149.8 377 29.4
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 6.9e-34 149.8 369 30.4
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 9.0e-34 149.4 374 29.1
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.5e-33 148.7 375 29.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.5e-33 148.7 379 30.6
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.0e-33 148.3 373 31.4
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.6e-33 147.9 375 30.4
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 3.4e-33 147.5 394 29.7
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 4.5e-33 147.1 367 31.9
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 4.5e-33 147.1 371 32.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 5.9e-33 146.7 371 29.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.0e-32 146.0 374 29.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.0e-32 146.0 374 29.4
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 1.7e-32 145.2 366 30.1
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.7e-32 145.2 376 29.5
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 2.2e-32 144.8 373 29.8
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.2e-32 144.8 392 30.6
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.9e-32 144.4 376 30.3
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 3.8e-32 144.1 400 29.0
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 5.0e-32 143.7 372 29.8
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 6.5e-32 143.3 376 29.5
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 6.5e-32 143.3 372 30.4
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 8.5e-32 142.9 366 30.1
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 8.5e-32 142.9 371 29.4
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.1e-31 142.5 372 30.9
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 1.4e-31 142.1 364 31.3
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.4e-31 142.1 373 30.0
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.9e-31 141.7 373 30.8
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.9e-31 141.7 359 33.1
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 2.5e-31 141.4 391 30.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.5e-31 141.4 373 30.0
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 3.2e-31 141.0 393 28.5
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 5.5e-31 140.2 129 56.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 5.5e-31 140.2 373 29.5
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 7.2e-31 139.8 371 29.1
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 9.3e-31 139.4 371 29.4
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.3e-31 139.4 371 32.6
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 9.3e-31 139.4 398 29.4
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.7e-30 137.9 390 29.7
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.0e-29 136.0 364 30.8
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.3e-29 135.6 370 29.2
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.3e-29 134.8 393 29.0
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.0e-29 134.4 373 29.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 3.9e-29 134.0 367 30.2
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 3.9e-29 134.0 374 28.3
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.7e-29 132.9 373 29.2
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.9e-28 131.7 359 30.6
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.3e-28 131.0 377 29.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.3e-28 131.0 345 27.2
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.4e-28 129.8 377 29.4
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 7.4e-28 129.8 325 30.2
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.4e-28 129.8 317 30.9
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.3e-27 129.0 381 29.4
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.1e-26 125.9 311 30.9
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.1e-26 125.9 363 30.0
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 4.1e-26 124.0 154 42.9
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 5.3e-26 123.6 311 30.2
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.0e-25 121.7 305 30.2
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 5.9e-25 120.2 349 28.9
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.9e-24 117.9 374 28.6
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.8e-24 117.5 240 32.5
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.5e-23 114.8 249 30.9
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.5e-23 114.8 340 27.1
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 5.5e-23 113.6 310 29.7
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.0e-21 109.4 372 27.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 8.8e-21 106.3 293 27.3
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 3.3e-20 104.4 304 28.9
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 2.8e-19 101.3 225 32.4
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.4e-18 99.0 227 32.2
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 6.9e-18 96.7 254 29.5
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 2.2e-16 91.7 364 26.4
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.9e-16 91.3 224 31.2
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.5e-15 88.2 241 30.7
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.2e-15 86.7 185 33.5
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.4e-13 82.4 159 34.6
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.8e-10 72.0 216 24.5
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 9.1e-10 69.7 96 42.7
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.1e-10 69.7 295 25.1
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.6e-06 58.9 113 31.0


User provided reference genes

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