Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 0.0e+00 1214.9 619 100.0
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 5.3e-305 1050.4 622 88.6
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 2.4e-273 945.3 628 79.5
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 8.1e-237 823.9 669 68.6
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 5.3e-204 714.9 636 62.3
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.8e-191 673.3 635 59.1
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 6.9e-188 661.4 639 58.8
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 1.1e-185 654.1 687 55.3
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.4e-180 636.3 638 57.8
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 4.5e-179 632.1 633 56.7
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 3.8e-178 629.0 650 56.0
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 5.0e-178 628.6 660 56.2
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 1.4e-177 627.1 636 57.5
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 3.3e-174 615.9 637 56.0
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 2.8e-173 612.8 642 56.5
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 8.2e-173 611.3 636 55.7
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 3.1e-172 609.4 638 55.8
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 5.3e-172 608.6 636 55.3
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.7e-171 604.7 631 57.4
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 7.7e-171 604.7 631 57.4
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 3.8e-170 602.4 640 55.3
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 1.4e-169 600.5 641 56.2
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 3.2e-169 599.4 632 56.0
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 4.2e-169 599.0 647 54.9
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 7.2e-169 598.2 639 55.4
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 1.2e-168 597.4 636 55.0
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 5.2e-167 592.0 635 56.4
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 8.8e-167 591.3 643 53.5
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 2.0e-166 590.1 633 54.0
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 9.7e-166 587.8 647 54.9
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.1e-164 584.3 632 54.9
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 5.3e-164 582.0 649 53.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 1.3e-162 577.4 498 65.3
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.3e-162 577.4 640 54.5
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 8.5e-162 574.7 636 53.8
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 1.5e-158 563.9 638 51.4
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 6.3e-157 558.5 476 66.0
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 3.2e-153 546.2 645 51.6
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 3.2e-153 546.2 645 52.1
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 5.5e-153 545.4 632 51.7
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 6.1e-152 542.0 633 52.0
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 1.0e-151 541.2 640 50.5
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 3.4e-150 536.2 643 52.7
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.3e-149 531.9 655 49.9
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 1.4e-148 530.8 641 52.0
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 4.1e-148 529.3 649 50.2
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 3.5e-147 526.2 655 49.3
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 4.7e-144 515.8 634 50.8
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 5.2e-143 512.3 650 48.2
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 3.7e-141 506.1 647 48.8
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.2e-139 501.1 651 47.5
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 1.2e-139 501.1 649 47.5
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 1.3e-138 497.7 652 48.5
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 1.3e-138 497.7 650 47.8
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 6.6e-138 495.4 651 48.1
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.5e-137 494.2 636 49.2
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 5.6e-137 492.3 656 47.3
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 1.2e-134 484.6 595 50.6
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.1e-132 478.0 653 47.9
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 1.1e-132 478.0 698 47.1
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 4.1e-132 476.1 443 58.9
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 5.4e-132 475.7 622 47.6
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 2.3e-130 470.3 545 49.9
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.1e-129 468.0 678 45.0
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 1.5e-129 467.6 659 47.5
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 2.1e-128 463.8 666 46.8
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 3.1e-127 459.9 637 48.7
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 8.9e-127 458.4 647 46.8
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 3.4e-126 456.4 647 46.8
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 4.4e-126 456.1 652 47.1
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 4.4e-126 456.1 632 46.8
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 3.7e-125 453.0 638 47.2
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 4.9e-125 452.6 653 46.1
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 1.1e-124 451.4 656 47.4
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 1.2e-123 448.0 650 47.1
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 3.5e-123 446.4 634 47.0
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 7.8e-123 445.3 646 45.7
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 2.3e-122 443.7 533 49.7
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 1.9e-121 440.7 646 46.4
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 2.3e-119 433.7 645 46.0
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 6.0e-115 419.1 632 44.8
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 1.7e-114 417.5 631 44.5
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 2.8e-112 410.2 630 43.8
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.3e-109 401.4 483 49.1
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 2.2e-109 400.6 443 53.5
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 4.9e-109 399.4 653 44.9
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.9e-108 397.5 660 41.4
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 4.1e-108 396.4 639 44.3
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 7.8e-107 392.1 528 46.2
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 2.3e-106 390.6 616 44.6
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 4.4e-102 376.3 643 43.2
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 6.4e-101 372.5 684 41.5
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.2e-99 368.2 638 41.8
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.1e-99 367.5 637 40.3
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 1.5e-97 361.3 635 42.8
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 4.2e-92 343.2 636 41.8
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 4.2e-92 343.2 522 42.9
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 7.9e-91 339.0 649 41.1
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.3e-90 338.2 635 41.1
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 2.3e-90 337.4 634 39.9
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.9e-90 336.7 659 40.4
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 5.1e-90 336.3 602 41.7
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 3.7e-88 330.1 636 40.1
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 6.2e-88 329.3 471 45.2
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 3.1e-87 327.0 629 39.4
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 4.0e-87 326.6 625 39.0
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 9.0e-87 325.5 673 37.1
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 1.7e-85 321.2 635 40.2
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 8.4e-85 318.9 636 40.7
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.1e-84 318.5 635 40.0
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 3.9e-82 310.1 706 38.1
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 8.7e-82 308.9 619 39.6
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 3.3e-81 307.0 356 52.5
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 1.3e-80 305.1 470 42.3
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 9.0e-79 298.9 641 39.2
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 1.2e-78 298.5 655 39.1
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 2.2e-77 294.3 771 34.4
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 2.5e-68 264.2 442 40.5
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 4.5e-62 243.4 436 40.1
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 1.3e-61 241.9 454 39.9
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 1.3e-61 241.9 624 32.7
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 2.1e-59 234.6 147 81.0
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 3.1e-55 220.7 722 34.6
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 4.1e-55 220.3 650 34.0
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 5.5e-52 209.9 166 63.9
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 2.3e-50 204.5 258 48.8
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 1.8e-47 194.9 190 61.1
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 5.3e-47 193.4 648 31.5
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 3.5e-30 137.5 182 47.8
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 3.0e-26 124.4 731 26.9
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 7.5e-25 119.8 423 30.7
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 1.1e-20 105.9 1009 24.0
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 5.2e-18 97.1 114 52.6
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 1.2e-17 95.9 112 50.0
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 1.5e-17 95.5 193 38.9
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.9e-12 78.6 83 54.2
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 3.3e-12 77.8 913 23.4
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 4.0e-10 70.9 117 42.7
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 9.8e-09 66.2 249 34.1
Nn5g30945 Nelumbo nucifera HOM05D005409 ORTHO05D006456 7.8e-06 56.6 47 55.3


User provided reference genes

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