Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 2.0e-170 602.4 324 100.0
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.3e-105 387.1 334 69.5
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 1.6e-66 257.3 349 55.0
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-54 218.0 330 50.6
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.8e-54 217.2 332 50.0
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 9.0e-54 214.9 341 50.7
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.8e-52 209.5 341 50.7
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.4e-45 186.4 334 47.6
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.4e-38 163.7 328 42.4
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 5.3e-38 162.5 341 41.1
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.5e-37 159.5 347 40.1
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.8e-37 159.1 287 44.3
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.8e-37 159.1 329 40.4
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 4.9e-36 156.0 346 40.2
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 4.2e-35 152.9 334 41.9
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 5.5e-35 152.5 347 39.8
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.6e-34 151.0 347 40.1
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 4.6e-34 149.4 354 38.4
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 7.9e-34 148.7 331 40.5
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 5.1e-33 146.0 342 40.1
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.9e-32 144.1 347 39.5
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.5e-32 143.7 342 41.8
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 2.5e-32 143.7 329 40.1
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 3.3e-32 143.3 290 46.6
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 5.7e-32 142.5 351 39.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-31 141.0 331 41.4
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-31 141.0 331 41.4
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.7e-31 139.8 334 41.9
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.8e-30 137.5 281 42.3
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 9.0e-30 135.2 332 41.0
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.2e-29 134.8 327 39.4
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 2.6e-29 133.7 332 41.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 5.8e-29 132.5 332 40.1
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.0e-28 131.7 343 38.2
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 1.3e-28 131.3 203 50.2
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.2e-28 130.6 338 37.3
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 2.2e-28 130.6 327 40.7
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.1e-27 128.3 328 37.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.4e-27 127.9 331 39.9
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 5.5e-27 125.9 340 38.2
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.5e-26 123.2 340 37.4
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 6.1e-26 122.5 342 36.5
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.3e-25 121.3 355 38.3
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.8e-25 120.9 327 37.0
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.8e-25 120.9 327 37.0
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 5.1e-25 119.4 331 36.6
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.5e-24 117.9 333 37.2
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.9e-24 117.5 333 37.2
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 3.3e-24 116.7 327 37.6
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 5.7e-24 115.9 330 37.3
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 5.7e-24 115.9 358 36.0
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 9.7e-24 115.2 285 42.1
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 2.2e-23 114.0 338 35.8
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 4.8e-23 112.8 325 38.2
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 3.1e-22 110.2 329 38.0
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 9.0e-22 108.6 362 34.0
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.5e-21 107.8 361 34.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.0e-21 107.5 362 35.9
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 5.9e-21 105.9 333 35.4
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 5.9e-21 105.9 354 37.6
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 7.7e-21 105.5 332 36.1
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.0e-20 105.1 334 36.5
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.0e-20 105.1 334 36.5
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.0e-20 105.1 274 42.3
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.5e-19 100.5 342 35.4
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 3.2e-19 100.1 343 36.2
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 9.4e-19 98.6 239 38.9
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.7e-18 97.1 299 38.1
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 4.6e-18 96.3 337 35.3
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 7.9e-18 95.5 336 35.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.8e-17 94.4 337 35.3
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.8e-17 94.4 311 36.3
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.3e-17 94.0 286 37.1
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.0e-17 93.6 289 37.4
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.0e-16 90.9 351 32.2
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 3.3e-16 90.1 232 39.7
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 5.7e-16 89.4 359 33.1
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 9.7e-16 88.6 329 34.3
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.3e-15 88.2 331 35.6
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.7e-15 87.8 252 36.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.7e-15 87.8 282 38.3
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 2.2e-15 87.4 329 34.0
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 2.2e-15 87.4 329 34.0
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 2.2e-15 87.4 329 34.0
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.8e-15 87.0 324 32.4
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 6.3e-15 85.9 330 34.8
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.1e-14 85.1 189 42.9
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.1e-14 85.1 189 42.9
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.1e-14 85.1 350 32.3
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.4e-14 84.7 335 32.5
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 3.1e-14 83.6 332 32.8
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 4.1e-14 83.2 324 30.6
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 6.9e-14 82.4 329 33.4
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 9.1e-14 82.0 332 34.3
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.5e-13 81.3 237 36.7
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.0e-13 80.9 294 36.1
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.6e-13 80.5 331 32.6
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.6e-13 80.5 331 32.6
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.6e-13 80.5 331 32.6
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 2.6e-13 80.5 345 33.3
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 3.4e-13 80.1 342 33.3
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 3.4e-13 80.1 333 32.4
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 3.4e-13 80.1 328 32.0
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 4.5e-13 79.7 324 31.5
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 4.5e-13 79.7 283 36.4
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 5.9e-13 79.3 338 31.1
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 7.7e-13 79.0 340 34.4
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 7.7e-13 79.0 338 35.5
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 1.3e-12 78.2 348 33.0
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 1.3e-12 78.2 357 32.5
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.7e-12 77.8 337 35.3
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.9e-12 77.0 207 37.7
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.9e-12 77.0 290 34.8
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 3.8e-12 76.6 343 33.2
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 5.0e-12 76.3 197 41.1
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 6.5e-12 75.9 334 31.4
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.4e-11 74.7 288 34.0
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.9e-11 74.3 289 36.0
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.9e-11 74.3 342 32.2
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.9e-11 74.3 329 34.0
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 7.2e-11 72.4 227 37.0
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 7.2e-11 72.4 291 34.7
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 9.4e-11 72.0 329 32.2
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 9.4e-11 72.0 170 41.2
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.2e-10 71.6 218 39.0
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 1.2e-10 71.6 284 32.4
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.6e-10 71.2 360 30.6
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 2.1e-10 70.9 218 38.5
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 2.1e-10 70.9 295 34.6
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 2.1e-10 70.9 205 37.1
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 3.6e-10 70.1 337 32.0
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 3.6e-10 70.1 337 32.0
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 4.7e-10 69.7 253 34.4
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 4.7e-10 69.7 225 34.2
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 4.7e-10 69.7 317 31.9
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 7.9e-10 68.9 337 31.2
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 7.9e-10 68.9 236 35.6
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 2.3e-09 67.4 287 34.5
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.0e-09 67.0 341 28.7
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 3.9e-09 66.6 206 37.9
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 3.9e-09 66.6 289 36.7
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 3.9e-09 66.6 284 33.1
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.1e-09 66.2 207 35.7
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 5.1e-09 66.2 328 31.4
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 6.7e-09 65.9 200 35.0
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 8.8e-09 65.5 349 29.8
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 8.8e-09 65.5 351 32.8
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 1.1e-08 65.1 229 34.5
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 2.0e-08 64.3 295 32.9
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 2.6e-08 63.9 355 27.0
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 3.3e-08 63.5 290 32.1
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 4.4e-08 63.2 364 31.0
arahy.Tifrunner.gnm1.ann1.R48FJM Arachis hypogaea HOM05D004441 ORTHO05D003109 5.7e-08 62.8 84 52.4
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 7.4e-08 62.4 328 29.0
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 1.3e-07 61.6 207 34.3
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 1.7e-07 61.2 338 27.5
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 2.2e-07 60.8 337 28.8
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 2.8e-07 60.5 198 34.3
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 3.7e-07 60.1 335 29.6
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 3.7e-07 60.1 343 29.4
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 4.8e-07 59.7 334 31.1
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 8.2e-07 58.9 354 29.4
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 1.1e-06 58.5 327 32.4
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.1e-06 58.5 327 28.7
ATR0693G189 Amborella trichopoda HOM05D066013 ORTHO05D038320 1.4e-06 58.2 216 34.7
CDE02G3343 Ceratophyllum demersum HOM05D004441 ORTHO05D003109 1.8e-06 57.8 225 33.8
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.8e-06 57.8 330 33.0
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 1.8e-06 57.8 201 35.3
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.4e-06 57.4 351 28.2
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 4.1e-06 56.6 205 33.7
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 5.3e-06 56.2 355 29.3
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 7.0e-06 55.8 275 33.1
CANSAT35G1057 Cannabis sativa HOM05D004441 ORTHO05D003109 9.1e-06 55.5 183 39.3


User provided reference genes

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