Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1298900 Malus domestica HOM05D001070 ORTHO05D002096 8.4e-51 203.4 101 100.0
EL10Ac2g02883 Beta vulgaris HOM05D001070 ORTHO05D002096 2.6e-20 102.1 102 56.9
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 1.3e-19 99.8 82 64.6
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 2.7e-17 92.0 68 69.1
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 2.7e-17 92.0 68 69.1
CSS0017227 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 1.0e-16 90.1 59 72.9
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 1.0e-16 90.1 59 74.6
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.0e-16 90.1 60 73.3
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 1.4e-16 89.7 68 66.2
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 1.4e-16 89.7 68 66.2
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.4e-16 89.7 68 66.2
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10013927m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.8e-16 89.4 68 66.2
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-16 89.4 80 61.2
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-16 89.4 80 61.2
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-16 89.4 80 61.2
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-16 89.4 80 61.2
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 1.8e-16 89.4 80 61.2
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.3e-16 89.0 68 66.2
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 3.0e-16 88.6 68 66.2
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 3.0e-16 88.6 68 66.2
CANSAT78G0545 Cannabis sativa HOM05D001070 ORTHO05D002096 3.9e-16 88.2 59 72.9
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.9e-16 88.2 68 63.2
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 5.1e-16 87.8 94 54.3
Manes.11G122808 Manihot esculenta HOM05D001070 ORTHO05D002096 5.1e-16 87.8 68 64.7
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 6.7e-16 87.4 68 66.2
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 6.7e-16 87.4 68 67.6
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 6.7e-16 87.4 68 67.6
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.1e-15 86.7 68 64.7
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 1.5e-15 86.3 68 66.2
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-15 86.3 68 64.7
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.5e-15 86.3 59 76.3
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-15 85.5 68 63.2
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-15 85.5 68 63.2
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-15 85.5 68 63.2
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-15 85.1 59 67.8
Gohir.D10G139001 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-15 85.1 59 69.5
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 3.3e-15 85.1 68 67.6
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 4.4e-15 84.7 66 65.2
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 4.4e-15 84.7 80 57.5
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 68 67.6
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 68 67.6
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 68 67.6
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 68 67.6
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 68 67.6
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.7e-15 84.3 68 67.6
MELO3C008746.2 Cucumis melo HOM05D001070 ORTHO05D002096 7.4e-15 84.0 59 72.9
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 63.2
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.7e-15 83.6 59 67.8
Gorai.011G154800 Gossypium raimondii HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 61.8
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 9.7e-15 83.6 68 66.2
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 1.3e-14 83.2 68 61.8
Glyma.01G114300 Glycine max HOM05D001070 ORTHO05D002096 1.7e-14 82.8 68 63.2
Gohir.A11G056766 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.2e-14 82.4 61 67.2
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 2.8e-14 82.0 59 72.9
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-14 82.0 59 72.9
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.7e-14 81.6 59 71.2
BolSC43t60809H Brassica oleracea HOM05D001070 ORTHO05D002096 4.8e-14 81.3 70 62.9
BolC2t10605H Brassica oleracea HOM05D001070 ORTHO05D002096 6.3e-14 80.9 69 63.8
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 6.3e-14 80.9 59 71.2
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 8.2e-14 80.5 59 71.2
arahy.Tifrunner.gnm1.ann1.0FQ6JR Arachis hypogaea HOM05D001070 ORTHO05D002096 8.2e-14 80.5 59 67.8
arahy.Tifrunner.gnm1.ann1.13XSJR Arachis hypogaea HOM05D001070 ORTHO05D002096 8.2e-14 80.5 59 67.8
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 8.2e-14 80.5 68 63.2
Lalb_Chr16g0388601 Lupinus albus HOM05D001070 ORTHO05D002096 1.4e-13 79.7 59 69.5
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.4e-13 79.7 68 63.2
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-13 79.3 68 60.3
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 1.8e-13 79.3 68 60.3
Gohir.A13G082266 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.1e-13 78.6 68 57.4
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 5.3e-13 77.8 59 66.1
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 7.0e-13 77.4 68 60.3
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 7.0e-13 77.4 59 67.8
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 7.0e-13 77.4 59 67.8
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 7.0e-13 77.4 59 67.8
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 7.0e-13 77.4 59 67.8
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 7.0e-13 77.4 59 64.4
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 1.2e-12 76.6 81 56.8
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 1.6e-12 76.3 71 57.7
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 1.6e-12 76.3 79 54.4
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 4.5e-12 74.7 59 59.3
Solyc11g039900.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.9e-12 74.3 73 58.9
CARHR180900 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.3e-11 73.2 61 60.7
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 1.7e-11 72.8 79 51.9
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.7e-11 72.8 59 69.5
arahy.Tifrunner.gnm1.ann1.R84DZU Arachis hypogaea HOM05D001070 ORTHO05D002096 2.2e-11 72.4 107 46.7
Psat0s1160g0280 Pisum sativum HOM05D001070 ORTHO05D002096 2.2e-11 72.4 60 58.3
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 3.8e-11 71.6 69 58.0
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.8e-11 71.6 52 71.2
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 1.5e-10 69.7 59 57.6
Nitab4.5_0001574g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.5e-10 69.7 54 66.7
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.5e-10 69.7 74 54.1
arahy.Tifrunner.gnm1.ann1.XG10WT Arachis hypogaea HOM05D001070 ORTHO05D002096 2.5e-10 68.9 50 68.0
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 4.2e-10 68.2 59 61.0
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 5.5e-10 67.8 46 71.7
BraSC58t46457Z Brassica rapa HOM05D001070 ORTHO05D002096 1.2e-09 66.6 83 47.0
DCAR_011103 Daucus carota HOM05D001070 ORTHO05D002096 2.7e-09 65.5 45 71.1
Solyc05g047440.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.7e-09 65.5 51 68.6
Hund28771 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.6e-09 65.1 61 55.7
Hund29772 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.6e-09 65.1 61 55.7
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.7e-09 64.7 47 68.1
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund29267 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 92 45.7
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund29396 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.7e-09 64.7 77 50.6
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.0e-09 63.9 52 63.5
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 3.0e-08 62.0 47 66.0
EL10Ac4g08268 Beta vulgaris HOM05D001070 ORTHO05D002096 1.1e-07 60.1 39 71.8
Lsat_1_v5_gn_6_14501 Lactuca sativa HOM05D001070 ORTHO05D002096 2.0e-07 59.3 84 46.4
BolC2t10608H Brassica oleracea HOM05D001070 ORTHO05D002096 2.6e-07 58.9 57 56.1
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 2.6e-07 58.9 47 61.7
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 2.6e-07 58.9 68 48.5
Hund01218 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.3e-07 58.5 61 52.5
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 4.4e-07 58.2 55 56.4
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.4e-07 58.2 62 50.0
Solyc11g021180.2 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.4e-07 58.2 42 71.4
MELO3C027943.2 Cucumis melo HOM05D001070 ORTHO05D002096 7.5e-07 57.4 44 63.6
Sed0006483 Sechium edule HOM05D001070 ORTHO05D002096 7.5e-07 57.4 44 63.6
MELO3C030661.2 Cucumis melo HOM05D001070 ORTHO05D002096 9.7e-07 57.0 35 74.3
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 9.7e-07 57.0 35 71.4
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 1.7e-06 56.2 55 54.5
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 1.7e-06 56.2 55 54.5
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 2.2e-06 55.8 44 61.4
EL10Ac1g01876 Beta vulgaris HOM05D000972 ORTHO05D002096 3.7e-06 55.1 37 70.3
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.7e-06 55.1 44 61.4
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 4.8e-06 54.7 55 52.7


User provided reference genes

Program Settings