Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1637.1 901 100.0
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1426.4 902 88.2
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 0.0e+00 1304.3 910 82.2
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1146.0 907 73.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1129.0 946 70.8
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 0.0e+00 1120.9 944 70.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1119.4 944 71.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1113.6 945 70.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1109.0 946 70.6
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.7e-283 979.5 938 61.6
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 5.9e-281 971.1 928 61.4
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 5.6e-271 937.9 945 59.5
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.7e-270 934.9 941 59.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.3e-263 912.1 813 62.7
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 3.6e-254 882.1 950 56.9
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 4.0e-253 878.6 939 56.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 4.0e-253 878.6 951 55.4
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 8.9e-253 877.5 939 58.8
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 3.2e-250 869.0 951 56.2
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.6e-249 865.1 938 56.7
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 5.6e-247 858.2 931 55.5
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.4e-245 852.8 949 55.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.6e-244 849.4 938 54.5
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-241 840.5 959 53.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 3.9e-240 835.5 948 54.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.9e-239 833.2 931 54.6
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 7.3e-239 831.2 948 54.4
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 9.6e-239 830.9 951 54.9
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.1e-238 829.7 939 54.2
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 8.1e-238 827.8 964 53.5
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 5.3e-237 825.1 939 54.3
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.9e-237 824.7 935 53.7
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.7e-235 820.1 994 51.3
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.2e-235 819.7 944 53.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 4.9e-235 818.5 960 53.2
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 4.9e-235 818.5 995 55.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 4.6e-233 812.0 956 52.8
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-232 810.8 919 54.6
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 4.3e-231 805.4 994 54.4
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.8e-230 802.7 979 52.0
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 6.2e-230 801.6 963 52.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 6.9e-229 798.1 950 51.6
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 1.2e-228 797.3 948 52.6
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.4e-226 790.4 757 59.2
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-225 786.9 912 53.1
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.5e-223 779.6 942 52.9
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-222 777.3 824 56.6
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 9.0e-221 771.2 855 53.8
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.0e-220 770.0 1030 48.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.4e-220 769.2 949 51.4
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.5e-220 768.8 987 50.2
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 4.5e-220 768.8 999 49.5
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.9e-219 765.4 958 50.9
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.1e-218 764.2 906 53.2
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.7e-217 759.6 928 51.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.7e-217 759.6 960 50.9
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.7e-217 759.6 942 50.5
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 2.7e-217 759.6 1030 50.8
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 5.1e-216 755.4 847 53.6
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.9e-215 753.4 928 49.7
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.5e-215 753.1 991 49.1
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.9e-213 745.0 955 50.6
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.5e-212 743.8 1031 48.9
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 5.0e-211 738.8 1018 48.1
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.1e-209 733.4 955 49.8
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.7e-209 733.0 955 49.7
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 4.6e-209 732.3 974 49.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.1e-208 728.8 976 49.0
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 9.7e-207 724.5 821 53.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 3.1e-205 719.5 1127 43.9
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.3e-203 714.1 921 51.6
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.5e-202 709.9 881 49.5
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 4.2e-202 709.1 949 48.8
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.6e-201 707.2 917 49.6
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.1e-201 705.3 801 53.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-200 703.7 931 46.9
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.9e-200 702.6 938 47.9
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 5.7e-199 698.7 935 46.5
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.7e-195 687.2 943 47.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.2e-195 686.8 787 52.5
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 8.5e-195 684.9 942 46.9
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-194 684.1 994 46.2
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.2e-194 682.9 1006 48.3
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 6.1e-193 678.7 926 48.2
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 6.3e-190 668.7 1007 48.1
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 5.3e-189 665.6 830 49.8
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 3.5e-188 662.9 967 46.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.3e-187 661.0 949 46.3
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.5e-186 657.5 845 50.1
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.8e-184 650.6 947 45.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.0e-184 649.8 948 45.6
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.0e-184 649.8 948 45.6
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 7.5e-183 645.2 894 46.1
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 6.3e-182 642.1 912 47.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.3e-182 641.7 890 48.4
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.1e-181 639.4 818 48.4
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 4.1e-181 639.4 948 45.8
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.2e-180 637.9 941 44.7
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.0e-180 637.1 930 45.9
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.0e-180 637.1 930 45.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 7.7e-180 635.2 820 50.5
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.0e-179 634.8 941 44.6
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.2e-179 633.6 949 44.7
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 8.5e-179 631.7 965 44.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 8.5e-179 631.7 942 44.7
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 7.2e-178 628.6 776 50.3
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 4.7e-177 625.9 952 44.4
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.0e-176 623.2 927 46.0
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.0e-176 623.2 931 45.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 8.8e-176 621.7 970 43.7
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.4e-175 619.4 965 44.6
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 9.8e-175 618.2 1010 43.3
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.2e-174 617.1 928 44.6
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-174 617.1 857 46.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 3.7e-174 616.3 1002 43.6
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.3e-174 615.5 857 46.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 4.5e-172 609.4 920 45.4
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.5e-170 601.7 906 44.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.6e-169 599.7 949 42.1
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 6.1e-169 599.0 836 47.8
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 7.0e-165 585.5 959 43.5
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 9.5e-162 575.1 936 43.1
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.1e-154 551.6 803 43.0
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.6e-153 547.7 951 43.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.7e-153 546.2 967 40.1
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 4.0e-152 543.1 959 42.8
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.0e-151 540.8 823 42.9
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.9e-126 456.4 867 38.9
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.0e-123 448.7 981 36.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 7.1e-117 426.0 898 37.8
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.4e-111 407.1 284 73.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-109 401.4 866 34.4
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-109 401.4 866 34.4
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.1e-104 385.6 691 39.7
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.1e-101 375.6 382 60.5
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.2e-100 372.1 779 35.2
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.5e-95 353.6 557 44.9
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.0e-91 340.9 368 54.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.4e-80 305.4 366 52.5
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 2.0e-74 285.0 996 27.1
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.2e-69 267.7 472 40.9
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.4e-69 266.2 391 45.5
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 4.5e-63 247.3 259 54.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.9e-62 244.6 270 51.9
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.5e-61 242.3 419 40.8
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 7.5e-50 203.4 139 77.7
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.4e-40 172.6 224 50.4
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.0e-38 164.1 284 40.8
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.8e-34 150.6 181 50.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.4e-32 146.0 248 39.5
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.2e-32 144.8 468 31.2
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.1e-31 142.1 216 46.3
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.6e-31 141.0 162 52.5
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 6.6e-30 137.1 166 42.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-27 129.4 111 62.2
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 8.9e-27 126.7 90 71.1
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 3.7e-25 121.3 72 81.9
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.7e-22 112.5 81 70.4
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.8e-20 105.1 65 80.0
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 3.6e-20 104.8 57 93.0
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 4.7e-20 104.4 89 58.4
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 6.2e-20 104.0 65 80.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 4.0e-19 101.3 118 44.9
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 6.8e-19 100.5 73 69.9
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.0e-18 99.0 89 56.2
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-17 96.3 62 71.0
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.1e-16 93.2 91 54.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.0e-15 87.4 59 81.4
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 2.3e-14 85.5 97 51.5
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.3e-14 85.5 61 67.2
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 6.2e-12 77.4 87 58.6
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 8.1e-12 77.0 88 47.7
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-11 75.9 95 45.3
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.4e-11 75.5 126 39.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.0e-11 74.7 99 50.5
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 9.0e-11 73.6 62 54.8
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.9e-08 65.9 66 54.5
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.4e-08 65.5 120 38.3
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 9.3e-08 63.5 60 50.0
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.6e-07 62.8 323 24.5
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.7e-07 62.0 62 51.6
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-06 59.7 148 39.9


User provided reference genes

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